git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPCR/branches/refactoring@41 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
@ -1,62 +0,0 @@
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r -1acghtgd -2gctcagctagcta /Users/coissac/encours/ecoPCR/tools/ecodb
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print put
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print out
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f ecoPCR
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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bt
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print label1
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up
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print label1
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print (char*)label1
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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bt
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up 3
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l
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b 38
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r
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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print label
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print ranks
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print *ranks
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print ranks->label +1
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print *ranks->label +1
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print *(ranks->label +1)
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print *(ranks->label +2)
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b ecotax.c:147
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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print current_taxon ;
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print current_taxon
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n
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print current_taxon ;
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print current_taxon
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print *current_taxon
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print taxonomy->taxons[11]
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print taxonomy->taxons[2952]
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print taxonomy->taxons->taxon[2952]
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print taxonomy->ranks->rank[11]
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print taxonomy->ranks->label[11]
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print taxonomy->ranks->label[3]
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b ecotax.c:147
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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print current_taxon
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print *current_taxon
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n
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print *current_taxon
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b ecotax.c:147
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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n
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print *current_taxon
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r -1GGGCAATCCTGAGCCAA -2CCATTGAGTCTCTGCACCTATC -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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n
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print *current_taxon
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b ecodna.c:70
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r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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*sb
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print *sb
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print sb
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print str
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b 52
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r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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print str
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r -1GGGCAATCCTGAGCC#A#A# -2CCATTGAGTCTCTGCACCTA#T#C# -l5 -L200 -e2 /Users/coissac/encours/ecoPCR/tools/ecodb
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bt
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@ -1,46 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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-include ../makefile.init
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RM := rm -rf
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# All of the sources participating in the build are defined here
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-include sources.mk
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-include subdir.mk
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-include src/libecoPCR/subdir.mk
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-include src/libapat/subdir.mk
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-include src/subdir.mk
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-include objects.mk
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ifneq ($(MAKECMDGOALS),clean)
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ifneq ($(strip $(C_DEPS)),)
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-include $(C_DEPS)
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endif
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endif
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-include ../makefile.defs
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# Add inputs and outputs from these tool invocations to the build variables
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# All Target
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all: ecoPCR
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# Tool invocations
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ecoPCR: $(OBJS) $(USER_OBJS)
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@echo 'Building target: $@'
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@echo 'Invoking: MacOS X C Linker'
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gcc -o "ecoPCR" $(OBJS) $(USER_OBJS) $(LIBS)
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@echo 'Finished building target: $@'
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@echo ' '
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# Other Targets
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clean:
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-$(RM) $(OBJS)$(EXECUTABLES)$(C_DEPS) ecoPCR
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-@echo ' '
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.PHONY: all clean dependents
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.SECONDARY:
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-include ../makefile.targets
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@ -1,7 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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LIBS := -lz
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USER_OBJS :=
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@ -1,19 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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C_SRCS :=
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O_SRCS :=
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ASM_SRCS :=
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S_SRCS :=
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OBJ_SRCS :=
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OBJS :=
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EXECUTABLES :=
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C_DEPS :=
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# Every subdirectory with source files must be described here
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SUBDIRS := \
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src/libecoPCR \
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src/libapat \
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src \
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@ -1,24 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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# Add inputs and outputs from these tool invocations to the build variables
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C_SRCS += \
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../src/libapat/CODES/gendual.c
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OBJS += \
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./src/libapat/CODES/gendual.o
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C_DEPS += \
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./src/libapat/CODES/gendual.d
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# Each subdirectory must supply rules for building sources it contributes
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src/libapat/CODES/%.o: ../src/libapat/CODES/%.c
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@echo 'Building file: $<'
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@echo 'Invoking: GCC C Compiler'
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gcc -DMAC_OS_X -O0 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<"
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@echo 'Finished building: $<'
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@echo ' '
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@ -1,30 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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# Add inputs and outputs from these tool invocations to the build variables
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C_SRCS += \
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../src/libapat/apat_parse.c \
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../src/libapat/apat_search.c \
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../src/libapat/libstki.c
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OBJS += \
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./src/libapat/apat_parse.o \
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./src/libapat/apat_search.o \
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./src/libapat/libstki.o
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C_DEPS += \
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./src/libapat/apat_parse.d \
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./src/libapat/apat_search.d \
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./src/libapat/libstki.d
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# Each subdirectory must supply rules for building sources it contributes
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src/libapat/%.o: ../src/libapat/%.c
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@echo 'Building file: $<'
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@echo 'Invoking: GCC C Compiler'
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gcc -DMAC_OS_X -O0 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<"
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@echo 'Finished building: $<'
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@echo ' '
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@ -1,45 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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# Add inputs and outputs from these tool invocations to the build variables
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C_SRCS += \
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../src/libecoPCR/ecoError.c \
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../src/libecoPCR/ecoIOUtils.c \
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../src/libecoPCR/ecoMalloc.c \
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../src/libecoPCR/ecoapat.c \
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../src/libecoPCR/ecodna.c \
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../src/libecoPCR/ecorank.c \
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../src/libecoPCR/ecoseq.c \
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../src/libecoPCR/ecotax.c
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OBJS += \
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./src/libecoPCR/ecoError.o \
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./src/libecoPCR/ecoIOUtils.o \
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./src/libecoPCR/ecoMalloc.o \
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./src/libecoPCR/ecoapat.o \
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./src/libecoPCR/ecodna.o \
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./src/libecoPCR/ecorank.o \
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./src/libecoPCR/ecoseq.o \
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./src/libecoPCR/ecotax.o
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C_DEPS += \
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./src/libecoPCR/ecoError.d \
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./src/libecoPCR/ecoIOUtils.d \
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./src/libecoPCR/ecoMalloc.d \
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./src/libecoPCR/ecoapat.d \
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./src/libecoPCR/ecodna.d \
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./src/libecoPCR/ecorank.d \
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./src/libecoPCR/ecoseq.d \
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./src/libecoPCR/ecotax.d
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# Each subdirectory must supply rules for building sources it contributes
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src/libecoPCR/%.o: ../src/libecoPCR/%.c
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@echo 'Building file: $<'
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@echo 'Invoking: GCC C Compiler'
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gcc -DMAC_OS_X -O0 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<"
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@echo 'Finished building: $<'
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@echo ' '
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@ -1,24 +0,0 @@
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################################################################################
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# Automatically-generated file. Do not edit!
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################################################################################
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# Add inputs and outputs from these tool invocations to the build variables
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C_SRCS += \
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../src/ecopcr.c
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OBJS += \
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./src/ecopcr.o
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C_DEPS += \
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./src/ecopcr.d
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# Each subdirectory must supply rules for building sources it contributes
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src/%.o: ../src/%.c
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@echo 'Building file: $<'
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@echo 'Invoking: GCC C Compiler'
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gcc -DMAC_OS_X -O0 -g3 -Wall -c -fmessage-length=0 -MMD -MP -MF"$(@:%.o=%.d)" -MT"$(@:%.o=%.d)" -o"$@" "$<"
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@echo 'Finished building: $<'
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@echo ' '
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Reference in New Issue
Block a user