obitools/ecoprimers
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Reintroduce -3 options to allow strict match at 3' end

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git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@230 60f365c0-8329-0410-b2a4-ec073aeeaa1d
This commit is contained in:
Eric Coissac
2009-07-28 21:07:27 +00:00
parent 79cadf0809
commit 494791d133
2 changed files with 8 additions and 8 deletions
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12
src/ecoprimer.c
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@ -566,12 +566,12 @@ int main(int argc, char **argv)
sscanf(optarg,"%d",&(options.error_max));
break;
//
// /* ------------------------ */
// case '3': /* three prime strict match */
// /* ------------------------ */
// sscanf(optarg,"%d",&(options.strict_three_prime));
// break;
/* ------------------------ */
case '3': /* three prime strict match */
/* ------------------------ */
sscanf(optarg,"%d",&(options.strict_three_prime));
break;
/* -------------------- */
case 'q': /* strict matching quorum */

4
src/libecoprimer/aproxpattern.c
View File

@ -97,8 +97,8 @@ pprimercount_t lookforAproxPrimer(pecodnadb_t database, uint32_t seqdbsize,uint3
params.circular = options->circular;
params.maxerr = options->error_max;
// params.omask = (1 << options->strict_three_prime) -1;
params.omask = 0;
params.omask = (1 << options->strict_three_prime) -1;
// params.omask = 0;
params.patlen = options->primer_length;
positions.val=NULL;