Initial commit for this soft

git-svn-id: https://www.grenoble.prabi.fr/svn/LECASofts/ecoPrimers/trunk@175 60f365c0-8329-0410-b2a4-ec073aeeaa1d

src/libtm/tm.c

@@ -0,0 +1,31 @@
+
+/**
+ * 
+ *  J Jr SantaLucia. 
+ *  A uni<6E>ed view of polymer, dumbbell, and oligonucleotide 
+ *  dna nearest-neighbor thermodynamics. 
+ *  Proc Natl Acad Sci U S A, 95(4):1460<36>1465, 1998 Feb 17.
+ */
+
+
+//Nearest-neighbor sequence
+//(5'-3'/5'-3') deltaH	  deltaS
+//         kcal/mol cal/(mol<6F>K)
+//AA/TT 	-7.9 	-22.2
+//AG/CT 	-7.8 	-21.0
+//AT/AT 	-7.2 	-20.4
+//AC/GT 	-8.4 	-22.4
+//GA/TC 	-8.2 	-22.2
+//GG/CC 	-8.0 	-19.9
+//GC/GC 	-9.8 	-24.4
+//TA/TA 	-7.2 	-21.3
+//TG/CA 	-8.5 	-22.7
+//CG/CG 	-10.6 	-27.2
+//Terminal A-T base pair 	2.3 	4.1
+//Terminal G-C base pair 	0.1 	-2.8
+
+
+float nearestNeighborTm(const char *oligo,float probe,float target)
+{
+	
+}