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2e038ce23c
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[ADD] option groups for options
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2013-04-17 13:42:51 +00:00 |
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f3981c5248
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Change doc of obisample
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2013-04-17 13:29:32 +00:00 |
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0288b0a7fd
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[ADD] Groups in In/Out options help display
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2013-04-17 13:25:47 +00:00 |
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0f348ec4fd
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obigrep doc
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2013-04-17 13:16:52 +00:00 |
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3981d9a544
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a few examples of sequence selections added in the doc
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2013-04-17 12:58:34 +00:00 |
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e927493f1d
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commented code corresponding to a fasta quality file no more suppported
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2013-04-17 12:43:49 +00:00 |
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ea88c91d98
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[ADD] ObiHelpFormatter to highlight group names
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2013-04-17 12:41:09 +00:00 |
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7a9b73710f
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2013-04-17 12:40:19 +00:00 |
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ca2d82331d
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2013-04-17 12:40:00 +00:00 |
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195e5bfd97
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2013-04-17 12:27:13 +00:00 |
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f8e67d1096
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Change option orders
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2013-04-17 10:22:17 +00:00 |
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beec664878
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2013-04-17 10:16:51 +00:00 |
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d0104f00a6
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Miss spelling and others errores
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2013-04-17 10:16:30 +00:00 |
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afbc4c6935
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Miss spelling and others errores
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2013-04-17 10:16:10 +00:00 |
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68d72c16b6
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remove a wrong import django
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2013-04-17 09:00:40 +00:00 |
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2108550fa7
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2013-04-17 08:49:59 +00:00 |
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0d632fba8b
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simplify options set and store result in dictionnary indexed by reference dbname
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2013-04-16 08:49:35 +00:00 |
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d087ebf822
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ecoTag is rename ecotag. The old name is declared as deprecated
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2013-04-16 08:41:01 +00:00 |
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92d7657cae
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Add a get method to BioSequence class for retreiving a tag with a default value
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2013-04-16 08:15:24 +00:00 |
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c06f06237d
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Patch a bug in the build_ext import
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2013-04-16 08:14:12 +00:00 |
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82cd7d871e
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remove --no-psyco option from doc
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2013-04-12 09:20:28 +00:00 |
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224827e398
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remove --fna --qual options from doc
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2013-04-12 09:18:35 +00:00 |
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b6b084f477
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2013-04-12 08:58:35 +00:00 |
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292c421fee
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2013-04-12 08:58:14 +00:00 |
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ab8589c975
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2013-04-12 08:57:32 +00:00 |
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85593e231d
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2013-04-12 08:46:05 +00:00 |
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ce856f1140
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2013-04-12 08:45:31 +00:00 |
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687c22ca89
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homogenize tag names and remove some options
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2013-04-12 07:48:07 +00:00 |
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b915ff7814
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add options --tag-list and --uniq-id to obiannotate
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2013-02-19 18:24:00 +00:00 |
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8b1b503495
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[MOD] Replaced 'pairend.limit' with 'pairend_limit'
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2013-01-09 14:05:34 +00:00 |
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0b0445106b
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added a bad iterator/parser for a specific file (for Pierre)
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2012-12-20 13:39:50 +00:00 |
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c0834dac75
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[MOD] set 'mode' value to 'joined' (because join may be evaluated as a string method)
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2012-12-19 14:54:33 +00:00 |
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e5ead0c811
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[MOD] changed method rawiteritems of abstract class BioSequence (the key=value tags were not parsed before printing i.e. were not visible)
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2012-12-19 14:38:18 +00:00 |
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4da37a7029
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[MOD] re-added 'head' 'singleton' and 'internal' as keywords of the sequence for old scripts compatibility purpose
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2012-11-23 12:58:53 +00:00 |
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0b02d7535c
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patch a bug in solexapairend
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2012-11-13 20:34:46 +00:00 |
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8177aaef3f
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patch a bug
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2012-11-13 16:44:34 +00:00 |
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a4932a40a4
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@tweet:Change the management of unaligned pairend reads
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2012-10-26 12:56:47 +00:00 |
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735978864c
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2012-10-26 12:16:21 +00:00 |
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fcab3899ae
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2012-10-26 12:13:24 +00:00 |
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8a41aa5eac
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2012-10-26 12:12:44 +00:00 |
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528a9dc883
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2012-10-26 11:42:25 +00:00 |
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3332032b6b
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remove .c file generated by cython from the archive
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2012-10-26 11:19:08 +00:00 |
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ad043d25b5
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Add local version of the counter class
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2012-10-24 14:36:09 +00:00 |
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53084c703e
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patch the addEdge method
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2012-10-22 21:52:39 +00:00 |
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99afea377e
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added the possibility to simulate sequencing errors in obingssim
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2012-10-19 11:33:19 +00:00 |
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29ea64ea04
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fixed a little error in convertEcoPCRDB
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2012-10-19 11:31:42 +00:00 |
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923ba6a710
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fixed a few old errors in the input/output format options help
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2012-10-17 17:03:20 +00:00 |
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dacaedf474
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made obitaxonomy better and added a -P option to force the adding of taxa under an ancestor specified in the sequences' headers
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2012-10-17 13:55:16 +00:00 |
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3faf2c7936
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updated ecoFindTaxids to read SILVA databases.
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2012-10-17 13:53:16 +00:00 |
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14bbcd66b3
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fixed ecoTag's help
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2012-10-17 13:52:42 +00:00 |
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