c18ce3ae1b
2012-10-16 14:17:19 +00:00
308abc5d57
updated obitaxonomy to read taxonomy paths when adding taxa from a file.
2012-10-16 12:53:39 +00:00
82f743447c
updated ecoFindTaxids to read UNITE databases.
2012-10-16 12:52:47 +00:00
4a9fbc367b
fixed a little bug
2012-10-12 12:59:42 +00:00
b7762e64c4
fixed ecoTag's help
2012-10-11 15:22:33 +00:00
0ef537aa4b
Added new options in obitaxonomy to add all the taxa from a file (-F, -S, -A)
2012-10-11 14:24:32 +00:00
4ce1df9cf1
new script ecoFindTaxids, find/add taxids identified from an ecoPCR database to a file with taxa names
2012-10-11 14:21:01 +00:00
ad9cf0653f
ADD: new option --fieldcutname to make ecoTag work with paired-end sequences (experimental)
2012-10-11 14:20:04 +00:00
4e33a4ab0d
@tweet:New bug release version
2012-10-10 08:44:25 +00:00
aa2931448a
2012-10-10 08:43:21 +00:00
43c7072515
add --run option in the tagEditOptions
2012-10-09 14:19:51 +00:00
3feea5a3e0
obiclean multi ratio
2012-10-09 12:54:21 +00:00
180abf68e4
fixed the subTreeIterator
2012-10-05 12:22:37 +00:00
d5106b0bff
deleting option double :'(
2012-10-01 15:13:58 +00:00
07ec017bd7
deleting option double :'(
2012-10-01 15:11:16 +00:00
0b45a77787
added an option "--hasancestor" to filter sequences with an ancestor of a specified taxid
2012-10-01 14:33:40 +00:00
4cbcf7c1ef
fix a little thing with convertEcoPCRDB
2012-09-21 13:32:45 +00:00
766ca3a0c6
@tweet: switch version number to 0.2.500
2012-09-19 16:35:36 +00:00
7162c53b0f
patch a division by zero error in the buildconsensus function
...
@tweet:patch a division by zero bug in the new version of solexapairend
2012-09-11 06:15:06 +00:00
1fd7d7b9f0
@tweet: Fix a memory leak in fastq readers.
2012-09-10 20:25:12 +00:00
c49f1131cd
changed a little something in convertEcoPCRDB to make it "cleaner"
2012-08-27 11:47:00 +00:00
45fb08d428
adding tool : convertEcoPCRDB. Converts an ecoPCR database to the format chosen by the user.
2012-08-27 11:38:35 +00:00
acb3b5502f
Add alignment quality check in solexapairend.
...
Upper cases in the solexapairend script name are removed to be consistent with other obitools names
a new command solexapairendnull is added to estimate null distribution of solexapairend alignement scores
@tweet: A new version of solexapairend including alignment quality check
2012-08-24 15:34:15 +00:00
ef640405a7
Add alignment quality check in solexapairend.
...
Upper cases in the solexapairend script name are removed to be consistent with other obitools names
a new command solexapairendnull is added to estimate null distribution of solexapairend alignement scores
2012-08-24 15:33:01 +00:00
a363530e4d
just a commit test
...
@tweet: a commit of ngsfilter
with less bug
2012-08-22 09:51:07 +00:00
1052c326a4
just a commit test
...
@tweet: a commit of ngsfilter
with less bug
2012-08-22 09:49:54 +00:00
7d1b75ab82
just a commit test
...
@tweet: a commit of ngsfilter
with less bug
2012-08-22 09:33:58 +00:00
aa8c2c736f
just a commit test
...
@tweet: a commit of ngsfilter
with less bug
2012-08-22 09:29:46 +00:00
baa5b51c5b
A new version of ngsfilger without a bug about error count between primers and sequence
2012-08-20 17:00:50 +00:00
0c001ae0be
A new version of ngsfilger without a bug about error count between primers and sequence
2012-08-20 16:49:31 +00:00
f5e810a7a7
A new version of ngsfilger without a bug about error count between primers and sequence
2012-08-20 16:42:39 +00:00
d2f1ed358a
Debuging read indexer
2012-06-28 06:35:51 +00:00
4892f93e96
Patch a bug for primers without tags
2012-06-27 21:20:29 +00:00
617638a4c1
Patch a bug for primers without tags
2012-06-26 21:49:04 +00:00
a2ecbace5e
Debuging read indexer
2012-06-26 21:00:57 +00:00
8e193d3206
Debuging read indexer
2012-06-26 20:52:57 +00:00
6abfe2b6e5
Debuging read indexer
2012-06-26 15:02:29 +00:00
ebccd91be8
Debuging read indexer
2012-06-26 15:01:45 +00:00
f1617ddd5d
Debuging read indexer
2012-06-26 15:00:55 +00:00
985dbd58ed
2012-06-26 14:30:19 +00:00
68eceb27fc
2012-06-26 14:29:46 +00:00
59ced95760
Debuging read indexer
2012-06-26 13:00:30 +00:00
acd8715095
Debuging read indexer
2012-06-26 12:44:33 +00:00
3da4cbd57e
Debuging read indexer
2012-06-26 12:38:52 +00:00
387ada47ba
Debuging read indexer
2012-06-26 12:37:00 +00:00
e5030b4e5d
Debuging read indexer
2012-06-26 12:36:17 +00:00
27be09978f
Debuging read indexer
2012-06-26 12:16:03 +00:00
27b91fc6ca
Debuging read indexer
2012-06-26 12:12:27 +00:00
9baec6f7f9
test a new obitools script for organelle assembling
2012-06-25 17:12:53 +00:00
0a9d0b24d4
test a new obitools script for organelle assembling
2012-06-25 16:01:31 +00:00
