Updated obi test to work with changes in taxonomy API

2017-10-04 15:50:32 +02:00
parent 1cb05de7e3
commit 0ab081f79e
1 changed files with 2 additions and 2 deletions
--- a/python/obitools3/commands/test.pyx
+++ b/python/obitools3/commands/test.pyx
@ -42,9 +42,9 @@ default_config = {


 def test_taxo(config, infos):
-    tax1 = Taxonomy.open(infos['dms'], config['obi']['taxo'], taxdump=True)
+    tax1 = Taxonomy.open_taxdump(infos['dms'], config['obi']['taxo'])
    tax1.write(TAXTEST)
-    tax2 = Taxonomy.open(infos['dms'], TAXTEST, taxdump=False)
+    tax2 = Taxonomy.open(infos['dms'], TAXTEST)
    assert len(tax1) == len(tax2), "Length of written taxonomy != length of read taxdump : "+str(len(tax2))+" != "+str(len(tax1))
    
    i = 0