obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Updated obi test to work with changes in taxonomy API

Browse Source
This commit is contained in:
Celine Mercier
2017-10-04 15:50:32 +02:00
parent 1cb05de7e3
commit 0ab081f79e
1 changed files with 2 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
python/obitools3/commands/test.pyx
View File

@ -42,9 +42,9 @@ default_config = {
def test_taxo(config, infos): def test_taxo(config, infos):
tax1 = Taxonomy.open(infos['dms'], config['obi']['taxo'], taxdump=True) tax1 = Taxonomy.open_taxdump(infos['dms'], config['obi']['taxo'])
tax1.write(TAXTEST) tax1.write(TAXTEST)
tax2 = Taxonomy.open(infos['dms'], TAXTEST, taxdump=False) tax2 = Taxonomy.open(infos['dms'], TAXTEST)
assert len(tax1) == len(tax2), "Length of written taxonomy != length of read taxdump : "+str(len(tax2))+" != "+str(len(tax1)) assert len(tax1) == len(tax2), "Length of written taxonomy != length of read taxdump : "+str(len(tax2))+" != "+str(len(tax1))
i = 0 i = 0