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uniq: now outputs an empty view if input view is empty instead of

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displaying an error
This commit is contained in:
Celine Mercier
2020-06-10 17:47:26 +02:00
parent 36a8aaa92e
commit 14a2579173
1 changed files with 5 additions and 4 deletions
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9
python/obitools3/commands/uniq.pyx
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@ -591,10 +591,11 @@ def run(config):
# Initialize the progress bar
pb = ProgressBar(len(entries), config, seconde=5)
try:
uniq_sequences(entries, o_view, pb, config, mergedKeys_list=config['uniq']['merge'], taxonomy=taxo, mergeIds=config['uniq']['mergeids'], categories=config['uniq']['categories'], max_elts=config['obi']['maxelts'])
except Exception, e:
raise RollbackException("obi uniq error, rollbacking view: "+str(e), o_view)
if len(entries) > 0:
try:
uniq_sequences(entries, o_view, pb, config, mergedKeys_list=config['uniq']['merge'], taxonomy=taxo, mergeIds=config['uniq']['mergeids'], categories=config['uniq']['categories'], max_elts=config['obi']['maxelts'])
except Exception, e:
raise RollbackException("obi uniq error, rollbacking view: "+str(e), o_view)
print("", file=sys.stderr)