obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Added missing *.cfiles

Browse Source
This commit is contained in:
Celine Mercier
2016-12-15 15:28:34 +01:00
parent 9b24818fe2
commit 191c83aafc
9 changed files with 585 additions and 0 deletions
Download Patch File Download Diff File Expand all files Collapse all files

65
python/obitools3/commands/lcs.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../src/bloom.h
../../../src/bloom.c
../../../src/char_str_indexer.h
../../../src/char_str_indexer.c
../../../src/crc64.h
../../../src/crc64.c
../../../src/dna_seq_indexer.h
../../../src/dna_seq_indexer.c
../../../src/encode.h
../../../src/encode.c
../../../src/hashtable.h
../../../src/hashtable.c
../../../src/murmurhash2.h
../../../src/murmurhash2.c
../../../src/obi_align.h
../../../src/obi_align.c
../../../src/obiavl.h
../../../src/obiavl.c
../../../src/obiblob_indexer.h
../../../src/obiblob_indexer.c
../../../src/obiblob.h
../../../src/obiblob.c
../../../src/obidebug.h
../../../src/obidms_taxonomy.h
../../../src/obidms_taxonomy.c
../../../src/obidms.h
../../../src/obidms.c
../../../src/obidmscolumn_blob.c
../../../src/obidmscolumn_blob.h
../../../src/obidmscolumn_bool.c
../../../src/obidmscolumn_bool.h
../../../src/obidmscolumn_char.c
../../../src/obidmscolumn_char.h
../../../src/obidmscolumn_float.c
../../../src/obidmscolumn_float.h
../../../src/obidmscolumn_idx.h
../../../src/obidmscolumn_idx.c
../../../src/obidmscolumn_int.c
../../../src/obidmscolumn_int.h
../../../src/obidmscolumn_qual.h
../../../src/obidmscolumn_qual.c
../../../src/obidmscolumn_seq.c
../../../src/obidmscolumn_seq.h
../../../src/obidmscolumn_str.c
../../../src/obidmscolumn_str.h
../../../src/obidmscolumn.h
../../../src/obidmscolumn.c
../../../src/obidmscolumndir.h
../../../src/obidmscolumndir.c
../../../src/obierrno.h
../../../src/obierrno.c
../../../src/obilittlebigman.h
../../../src/obilittlebigman.c
../../../src/obitypes.h
../../../src/obitypes.c
../../../src/obiview.h
../../../src/obiview.c
../../../src/sse_banded_LCS_alignment.h
../../../src/sse_banded_LCS_alignment.c
../../../src/uint8_indexer.h
../../../src/uint8_indexer.c
../../../src/upperband.h
../../../src/upperband.c
../../../src/utils.h
../../../src/utils.c

65
python/obitools3/obidms/capi/obialign.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obidms.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obidmscolumn.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obierrno.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obitaxonomy.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obitypes.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obiutils.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c

65
python/obitools3/obidms/capi/obiview.cfiles Normal file
View File

@ -0,0 +1,65 @@
../../../../src/bloom.h
../../../../src/bloom.c
../../../../src/char_str_indexer.h
../../../../src/char_str_indexer.c
../../../../src/crc64.h
../../../../src/crc64.c
../../../../src/dna_seq_indexer.h
../../../../src/dna_seq_indexer.c
../../../../src/encode.h
../../../../src/encode.c
../../../../src/hashtable.h
../../../../src/hashtable.c
../../../../src/murmurhash2.h
../../../../src/murmurhash2.c
../../../../src/obi_align.h
../../../../src/obi_align.c
../../../../src/obiavl.h
../../../../src/obiavl.c
../../../../src/obiblob_indexer.h
../../../../src/obiblob_indexer.c
../../../../src/obiblob.h
../../../../src/obiblob.c
../../../../src/obidebug.h
../../../../src/obidms_taxonomy.h
../../../../src/obidms_taxonomy.c
../../../../src/obidms.h
../../../../src/obidms.c
../../../../src/obidmscolumn_blob.c
../../../../src/obidmscolumn_blob.h
../../../../src/obidmscolumn_bool.c
../../../../src/obidmscolumn_bool.h
../../../../src/obidmscolumn_char.c
../../../../src/obidmscolumn_char.h
../../../../src/obidmscolumn_float.c
../../../../src/obidmscolumn_float.h
../../../../src/obidmscolumn_idx.h
../../../../src/obidmscolumn_idx.c
../../../../src/obidmscolumn_int.c
../../../../src/obidmscolumn_int.h
../../../../src/obidmscolumn_qual.h
../../../../src/obidmscolumn_qual.c
../../../../src/obidmscolumn_seq.c
../../../../src/obidmscolumn_seq.h
../../../../src/obidmscolumn_str.c
../../../../src/obidmscolumn_str.h
../../../../src/obidmscolumn.h
../../../../src/obidmscolumn.c
../../../../src/obidmscolumndir.h
../../../../src/obidmscolumndir.c
../../../../src/obierrno.h
../../../../src/obierrno.c
../../../../src/obilittlebigman.h
../../../../src/obilittlebigman.c
../../../../src/obitypes.h
../../../../src/obitypes.c
../../../../src/obiview.h
../../../../src/obiview.c
../../../../src/sse_banded_LCS_alignment.h
../../../../src/sse_banded_LCS_alignment.c
../../../../src/uint8_indexer.h
../../../../src/uint8_indexer.c
../../../../src/upperband.h
../../../../src/upperband.c
../../../../src/utils.h
../../../../src/utils.c