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Modified C API to set and get in columns: added functions to set and get

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using column names instead of pointers, and changed function names
This commit is contained in:
Celine Mercier
2016-08-02 16:33:19 +02:00
parent 312f50ff0f
commit 26b8e1f215
10 changed files with 691 additions and 234 deletions
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18
python/obitools3/obidms/_obidmscolumn_bool.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obibool_with_elt_name_in_view, \
obi_column_get_obibool_with_elt_idx_in_view, \
obi_column_set_obibool_with_elt_name_in_view, \
obi_column_set_obibool_with_elt_idx_in_view
from .capi.obiview cimport obi_get_bool_with_elt_name_and_col_p_in_view, \
obi_get_bool_with_elt_idx_and_col_p_in_view, \
obi_set_bool_with_elt_name_and_col_p_in_view, \
obi_set_bool_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIBool_NA, obibool_t
@ -17,7 +17,7 @@ cdef class OBIDMS_column_bool(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef obibool_t value
cdef object result
value = obi_column_get_obibool_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_bool_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIBool_NA :
@ -29,7 +29,7 @@ cdef class OBIDMS_column_bool(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
value = OBIBool_NA
if obi_column_set_obibool_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obibool_t> value) < 0:
if obi_set_bool_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obibool_t> value) < 0:
raise Exception("Problem setting a value in a column")
@ -38,7 +38,7 @@ cdef class OBIDMS_column_multi_elts_bool(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef obibool_t value
cdef object result
value = obi_column_get_obibool_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_bool_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIBool_NA :
@ -56,7 +56,7 @@ cdef class OBIDMS_column_multi_elts_bool(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obibool_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_bool_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIBool_NA :
@ -73,5 +73,5 @@ cdef class OBIDMS_column_multi_elts_bool(OBIDMS_column_multi_elts):
cpdef set_item(self, index_t line_nb, str element_name, object value):
if value is None :
value = OBIBool_NA
if obi_column_set_obibool_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obibool_t> value) < 0:
if obi_set_bool_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obibool_t> value) < 0:
raise Exception("Problem setting a value in a column")

18
python/obitools3/obidms/_obidmscolumn_char.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obichar_with_elt_name_in_view, \
obi_column_get_obichar_with_elt_idx_in_view, \
obi_column_set_obichar_with_elt_name_in_view, \
obi_column_set_obichar_with_elt_idx_in_view
from .capi.obiview cimport obi_get_char_with_elt_name_and_col_p_in_view, \
obi_get_char_with_elt_idx_and_col_p_in_view, \
obi_set_char_with_elt_name_and_col_p_in_view, \
obi_set_char_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIChar_NA, obichar_t
@ -15,7 +15,7 @@ cdef class OBIDMS_column_char(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef obichar_t value
cdef object result
value = obi_column_get_obichar_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIChar_NA :
@ -27,7 +27,7 @@ cdef class OBIDMS_column_char(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
value = OBIChar_NA
if obi_column_set_obichar_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)[0]) < 0:
if obi_set_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)[0]) < 0:
raise Exception("Problem setting a value in a column")
@ -36,7 +36,7 @@ cdef class OBIDMS_column_multi_elts_char(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef obichar_t value
cdef object result
value = obi_column_get_obichar_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_char_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIChar_NA :
@ -54,7 +54,7 @@ cdef class OBIDMS_column_multi_elts_char(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obichar_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIChar_NA :
@ -71,6 +71,6 @@ cdef class OBIDMS_column_multi_elts_char(OBIDMS_column_multi_elts):
cpdef set_item(self, index_t line_nb, str element_name, object value):
if value is None :
value = OBIChar_NA
if obi_column_set_obichar_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), str2bytes(value)[0]) < 0:
if obi_set_char_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), str2bytes(value)[0]) < 0:
raise Exception("Problem setting a value in a column")

18
python/obitools3/obidms/_obidmscolumn_float.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obifloat_with_elt_name_in_view, \
obi_column_get_obifloat_with_elt_idx_in_view, \
obi_column_set_obifloat_with_elt_name_in_view, \
obi_column_set_obifloat_with_elt_idx_in_view
from .capi.obiview cimport obi_get_float_with_elt_name_and_col_p_in_view, \
obi_get_float_with_elt_idx_and_col_p_in_view, \
obi_set_float_with_elt_name_and_col_p_in_view, \
obi_set_float_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIFloat_NA, obifloat_t
@ -15,7 +15,7 @@ cdef class OBIDMS_column_float(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef obifloat_t value
cdef object result
value = obi_column_get_obifloat_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_float_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIFloat_NA :
@ -27,7 +27,7 @@ cdef class OBIDMS_column_float(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
value = OBIFloat_NA
if obi_column_set_obifloat_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obifloat_t> value) < 0:
if obi_set_float_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obifloat_t> value) < 0:
raise Exception("Problem setting a value in a column")
@ -36,7 +36,7 @@ cdef class OBIDMS_column_multi_elts_float(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef obifloat_t value
cdef object result
value = obi_column_get_obifloat_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_float_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIFloat_NA :
@ -54,7 +54,7 @@ cdef class OBIDMS_column_multi_elts_float(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obifloat_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_float_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIFloat_NA :
@ -71,6 +71,6 @@ cdef class OBIDMS_column_multi_elts_float(OBIDMS_column_multi_elts):
cpdef set_item(self, index_t line_nb, str element_name, object value):
if value is None :
value = OBIFloat_NA
if obi_column_set_obifloat_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obifloat_t> value) < 0:
if obi_set_float_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obifloat_t> value) < 0:
raise Exception("Problem setting a value in a column")

18
python/obitools3/obidms/_obidmscolumn_int.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obiint_with_elt_name_in_view, \
obi_column_get_obiint_with_elt_idx_in_view, \
obi_column_set_obiint_with_elt_name_in_view, \
obi_column_set_obiint_with_elt_idx_in_view
from .capi.obiview cimport obi_get_int_with_elt_name_and_col_p_in_view, \
obi_get_int_with_elt_idx_and_col_p_in_view, \
obi_set_int_with_elt_name_and_col_p_in_view, \
obi_set_int_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIInt_NA, obiint_t
@ -17,7 +17,7 @@ cdef class OBIDMS_column_int(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef obiint_t value
cdef object result
value = obi_column_get_obiint_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIInt_NA :
@ -29,7 +29,7 @@ cdef class OBIDMS_column_int(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
value = OBIInt_NA
if obi_column_set_obiint_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obiint_t> value) < 0:
if obi_set_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, <obiint_t> value) < 0:
raise Exception("Problem setting a value in a column")
@ -38,7 +38,7 @@ cdef class OBIDMS_column_multi_elts_int(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef obiint_t value
cdef object result
value = obi_column_get_obiint_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_int_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIInt_NA :
@ -56,7 +56,7 @@ cdef class OBIDMS_column_multi_elts_int(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obiint_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIInt_NA :
@ -73,6 +73,6 @@ cdef class OBIDMS_column_multi_elts_int(OBIDMS_column_multi_elts):
cpdef set_item(self, index_t line_nb, str element_name, object value):
if value is None :
value = OBIInt_NA
if obi_column_set_obiint_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obiint_t> value) < 0:
if obi_set_int_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), <obiint_t> value) < 0:
raise Exception("Problem setting a value in a column")

44
python/obitools3/obidms/_obidmscolumn_qual.pyx
View File

@ -1,13 +1,13 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obiqual_char_with_elt_name_in_view, \
obi_column_get_obiqual_char_with_elt_idx_in_view, \
obi_column_set_obiqual_char_with_elt_name_in_view, \
obi_column_set_obiqual_char_with_elt_idx_in_view, \
obi_column_get_obiqual_int_with_elt_name_in_view, \
obi_column_get_obiqual_int_with_elt_idx_in_view, \
obi_column_set_obiqual_int_with_elt_name_in_view, \
obi_column_set_obiqual_int_with_elt_idx_in_view
from .capi.obiview cimport obi_get_qual_char_with_elt_name_and_col_p_in_view, \
obi_get_qual_char_with_elt_idx_and_col_p_in_view, \
obi_set_qual_char_with_elt_name_and_col_p_in_view, \
obi_set_qual_char_with_elt_idx_and_col_p_in_view, \
obi_get_qual_int_with_elt_name_and_col_p_in_view, \
obi_get_qual_int_with_elt_idx_and_col_p_in_view, \
obi_set_qual_int_with_elt_name_and_col_p_in_view, \
obi_set_qual_int_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIQual_char_NA, OBIQual_int_NA, const_char_p
@ -29,7 +29,7 @@ cdef class OBIDMS_column_qual(OBIDMS_column):
cdef int value_length
cdef object result
cdef int i
value = obi_column_get_obiqual_int_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, &value_length)
value = obi_get_qual_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, &value_length)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIQual_int_NA :
@ -44,7 +44,7 @@ cdef class OBIDMS_column_qual(OBIDMS_column):
cdef char* value
cdef object result
cdef int i
value = obi_column_get_obiqual_char_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_qual_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIQual_char_NA :
@ -58,23 +58,23 @@ cdef class OBIDMS_column_qual(OBIDMS_column):
cdef uint8_t* value_b
cdef int value_length
if value is None :
if obi_column_set_obiqual_int_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIQual_int_NA, 0) < 0:
if obi_set_qual_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIQual_int_NA, 0) < 0:
raise Exception("Problem setting a value in a column")
else :
value_length = len(value)
value_b = <uint8_t*> malloc(value_length * sizeof(uint8_t))
for i in range(value_length) :
value_b[i] = <uint8_t>value[i]
if obi_column_set_obiqual_int_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, value_b, value_length) < 0:
if obi_set_qual_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, value_b, value_length) < 0:
raise Exception("Problem setting a value in a column")
free(value_b)
cpdef set_str_line(self, index_t line_nb, object value):
if value is None :
if obi_column_set_obiqual_char_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIQual_char_NA) < 0:
if obi_set_qual_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIQual_char_NA) < 0:
raise Exception("Problem setting a value in a column")
else :
if obi_column_set_obiqual_char_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
if obi_set_qual_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
raise Exception("Problem setting a value in a column")
@ -85,7 +85,7 @@ cdef class OBIDMS_column_multi_elts_qual(OBIDMS_column_multi_elts):
cdef int value_length
cdef object result
cdef int i
value = obi_column_get_obiqual_int_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), &value_length)
value = obi_get_qual_int_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), &value_length)
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIQual_int_NA :
@ -99,7 +99,7 @@ cdef class OBIDMS_column_multi_elts_qual(OBIDMS_column_multi_elts):
cpdef object get_str_item(self, index_t line_nb, str element_name):
cdef char* value
cdef object result
value = obi_column_get_obiqual_char_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_qual_char_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIQual_char_NA :
@ -120,7 +120,7 @@ cdef class OBIDMS_column_multi_elts_qual(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obiqual_int_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i, &value_length)
value = obi_get_qual_int_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i, &value_length)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIQual_int_NA :
@ -145,7 +145,7 @@ cdef class OBIDMS_column_multi_elts_qual(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obiqual_char_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_qual_char_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIQual_char_NA :
@ -164,21 +164,21 @@ cdef class OBIDMS_column_multi_elts_qual(OBIDMS_column_multi_elts):
cdef uint8_t* value_b
cdef int value_length
if value is None :
if obi_column_set_obiqual_int_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), OBIQual_int_NA, 0) < 0:
if obi_set_qual_int_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), OBIQual_int_NA, 0) < 0:
raise Exception("Problem setting a value in a column")
else :
value_length = len(value)
value_b = <uint8_t*> malloc(value_length * sizeof(uint8_t))
for i in range(value_length) :
value_b[i] = <uint8_t>value[i]
if obi_column_set_obiqual_int_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b, value_length) < 0:
if obi_set_qual_int_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b, value_length) < 0:
raise Exception("Problem setting a value in a column")
free(value_b)
cpdef set_str_item(self, index_t line_nb, str element_name, object value):
if value is None :
if obi_column_set_obiqual_char_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), OBIQual_char_NA) < 0:
if obi_set_qual_char_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), OBIQual_char_NA) < 0:
raise Exception("Problem setting a value in a column")
else :
if obi_column_set_obiqual_char_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), str2bytes(value)) < 0:
if obi_set_qual_char_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), str2bytes(value)) < 0:
raise Exception("Problem setting a value in a column")

20
python/obitools3/obidms/_obidmscolumn_seq.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obiseq_with_elt_name_in_view, \
obi_column_get_obiseq_with_elt_idx_in_view, \
obi_column_set_obiseq_with_elt_name_in_view, \
obi_column_set_obiseq_with_elt_idx_in_view
from .capi.obiview cimport obi_get_seq_with_elt_name_and_col_p_in_view, \
obi_get_seq_with_elt_idx_and_col_p_in_view, \
obi_set_seq_with_elt_name_and_col_p_in_view, \
obi_set_seq_with_elt_idx_and_col_p_in_view
from .capi.obialign cimport obi_align_one_column
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBISeq_NA, const_char_p
@ -20,7 +20,7 @@ cdef class OBIDMS_column_seq(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef char* value
cdef object result
value = obi_column_get_obiseq_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_seq_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBISeq_NA :
@ -32,10 +32,10 @@ cdef class OBIDMS_column_seq(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
if obi_column_set_obiseq_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBISeq_NA) < 0:
if obi_set_seq_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBISeq_NA) < 0:
raise Exception("Problem setting a value in a column")
else :
if obi_column_set_obiseq_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
if obi_set_seq_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
raise Exception("Problem setting a value in a column")
# TODO choose alignment type (lcs or other) with supplementary argument
@ -56,7 +56,7 @@ cdef class OBIDMS_column_multi_elts_seq(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef char* value
cdef object result
value = obi_column_get_obiseq_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_seq_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBISeq_NA :
@ -75,7 +75,7 @@ cdef class OBIDMS_column_multi_elts_seq(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obiseq_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_seq_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBISeq_NA :
@ -102,7 +102,7 @@ cdef class OBIDMS_column_multi_elts_seq(OBIDMS_column_multi_elts):
else:
raise TypeError('Sequence value must be of type Bytes, Str or None')
if obi_column_set_obiseq_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b) < 0:
if obi_set_seq_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b) < 0:
raise Exception("Problem setting a value in a column")
# cpdef align(self, ): # TODO

20
python/obitools3/obidms/_obidmscolumn_str.pyx
View File

@ -1,9 +1,9 @@
#cython: language_level=3
from .capi.obiview cimport obi_column_get_obistr_with_elt_name_in_view, \
obi_column_get_obistr_with_elt_idx_in_view, \
obi_column_set_obistr_with_elt_name_in_view, \
obi_column_set_obistr_with_elt_idx_in_view
from .capi.obiview cimport obi_get_str_with_elt_name_and_col_p_in_view, \
obi_get_str_with_elt_idx_and_col_p_in_view, \
obi_set_str_with_elt_name_and_col_p_in_view, \
obi_set_str_with_elt_idx_and_col_p_in_view
from .capi.obierrno cimport obi_errno
from .capi.obitypes cimport OBIStr_NA, const_char_p
@ -15,7 +15,7 @@ cdef class OBIDMS_column_str(OBIDMS_column):
cpdef object get_line(self, index_t line_nb):
cdef const_char_p value
cdef object result
value = obi_column_get_obistr_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
value = obi_get_str_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIStr_NA :
@ -27,10 +27,10 @@ cdef class OBIDMS_column_str(OBIDMS_column):
cpdef set_line(self, index_t line_nb, object value):
if value is None :
if obi_column_set_obistr_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIStr_NA) < 0:
if obi_set_str_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, OBIStr_NA) < 0:
raise Exception("Problem setting a value in a column")
else :
if obi_column_set_obistr_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
if obi_set_str_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, 0, str2bytes(value)) < 0:
raise Exception("Problem setting a value in a column")
@ -39,7 +39,7 @@ cdef class OBIDMS_column_multi_elts_str(OBIDMS_column_multi_elts):
cpdef object get_item(self, index_t line_nb, str element_name):
cdef const_char_p value
cdef object result
value = obi_column_get_obistr_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
value = obi_get_str_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name))
if obi_errno > 0 :
raise IndexError(line_nb, element_name)
if value == OBIStr_NA :
@ -58,7 +58,7 @@ cdef class OBIDMS_column_multi_elts_str(OBIDMS_column_multi_elts):
result = {}
all_NA = True
for i in range(self.nb_elements_per_line) :
value = obi_column_get_obistr_with_elt_idx_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
value = obi_get_str_with_elt_idx_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, i)
if obi_errno > 0 :
raise IndexError(line_nb)
if value == OBIStr_NA :
@ -79,6 +79,6 @@ cdef class OBIDMS_column_multi_elts_str(OBIDMS_column_multi_elts):
value_b = OBIStr_NA
else :
value_b = str2bytes(value)
if obi_column_set_obistr_with_elt_name_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b) < 0:
if obi_set_str_with_elt_name_and_col_p_in_view(self.view.pointer, (self.pointer)[0], line_nb, str2bytes(element_name), value_b) < 0:
raise Exception("Problem setting a value in a column")

142
python/obitools3/obidms/capi/obiview.pxd
View File

@ -107,183 +107,197 @@ cdef extern from "obiview.h" nogil:
int obi_save_and_close_view(Obiview_p view)
int obi_column_set_obiint_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_INT
int obi_set_int_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
obiint_t value)
int obi_column_set_obiint_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_int_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
obiint_t value)
obiint_t obi_column_get_obiint_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
obiint_t obi_get_int_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
obiint_t obi_column_get_obiint_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
obiint_t obi_get_int_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
int obi_column_set_obibool_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_BOOL
int obi_set_bool_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
obibool_t value)
int obi_column_set_obibool_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_bool_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
obibool_t value)
obibool_t obi_column_get_obibool_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
obibool_t obi_get_bool_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
obibool_t obi_column_get_obibool_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
obibool_t obi_get_bool_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
int obi_column_set_obichar_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_CHAR
int obi_set_char_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
obichar_t value)
int obi_column_set_obichar_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_char_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
obichar_t value)
obichar_t obi_column_get_obichar_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
obichar_t obi_get_char_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
obichar_t obi_column_get_obichar_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
obichar_t obi_get_char_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
int obi_column_set_obifloat_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_FLOAT
int obi_set_float_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
obifloat_t value)
int obi_column_set_obifloat_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_float_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
obifloat_t value)
obifloat_t obi_column_get_obifloat_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
obifloat_t obi_get_float_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
obifloat_t obi_column_get_obifloat_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
obifloat_t obi_get_float_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
int obi_column_set_obiqual_char_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_QUAL
int obi_set_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
const char* value)
int obi_column_set_obiqual_int_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
const uint8_t* value,
int value_length)
char* obi_column_get_obiqual_char_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
char* obi_get_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
const uint8_t* obi_column_get_obiqual_int_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
const uint8_t* obi_get_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
int* value_length)
int obi_column_set_obiqual_char_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const char* element_name,
const char* value)
int obi_column_set_obiqual_int_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const char* element_name,
const uint8_t* value,
int value_length)
char* obi_column_get_obiqual_char_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
char* obi_get_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const char* element_name)
const uint8_t* obi_column_get_obiqual_int_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
const uint8_t* obi_get_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const char* element_name,
int* value_length)
int obi_column_set_obistr_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_STR
int obi_set_str_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
const_char_p value)
int obi_column_set_obistr_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_str_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
const_char_p value)
const_char_p obi_column_get_obistr_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
const_char_p obi_get_str_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
const_char_p obi_column_get_obistr_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
const_char_p obi_get_str_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)
int obi_column_set_obiseq_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
# OBI_SEQ
int obi_set_seq_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name,
const_char_p value)
int obi_column_set_obiseq_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
int obi_set_seq_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx,
const_char_p value)
char* obi_column_get_obiseq_with_elt_name_in_view(Obiview_p view,
OBIDMS_column_p column,
char* obi_get_seq_with_elt_name_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
const_char_p element_name)
char* obi_column_get_obiseq_with_elt_idx_in_view(Obiview_p view,
OBIDMS_column_p column,
char* obi_get_seq_with_elt_idx_and_col_p_in_view(Obiview_p view,
OBIDMS_column_p column_p,
index_t line_nb,
index_t element_idx)

426
src/obiview.c
View File

@ -1791,37 +1791,77 @@ int obi_save_and_close_view(Obiview_p view)
/*********** FOR BOOL COLUMNS ***********/
int obi_column_set_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obibool_t value)
int obi_set_bool_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, obibool_t value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
if (prepare_to_set_value_in_column(view, &column_p, &line_nb) < 0)
return -1;
return obi_column_set_obibool_with_elt_idx(column, line_nb, element_idx, value);
return obi_column_set_obibool_with_elt_idx(column_p, line_nb, element_idx, value);
}
obibool_t obi_column_get_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
obibool_t obi_get_bool_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIBool_NA;
return obi_column_get_obibool_with_elt_idx(column, line_nb, element_idx);
return obi_column_get_obibool_with_elt_idx(column_p, line_nb, element_idx);
}
int obi_column_set_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obibool_t value)
int obi_set_bool_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, obibool_t value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
index_t element_idx = obi_column_get_element_index_from_name(column_p, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obibool_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_bool_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
obibool_t obi_column_get_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
obibool_t obi_get_bool_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
index_t element_idx = obi_column_get_element_index_from_name(column_p, element_name);
if (element_idx == OBIIdx_NA)
return OBIBool_NA;
return obi_column_get_obibool_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_bool_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
int obi_set_bool_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obibool_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_bool_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_bool_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obibool_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_bool_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
obibool_t obi_get_bool_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIBool_NA;
return obi_get_bool_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
obibool_t obi_get_bool_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIBool_NA;
return obi_get_bool_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/
@ -1829,7 +1869,7 @@ obibool_t obi_column_get_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_co
/*********** FOR CHAR COLUMNS ***********/
int obi_column_set_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obichar_t value)
int obi_set_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obichar_t value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -1837,7 +1877,7 @@ int obi_column_set_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
}
obichar_t obi_column_get_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
obichar_t obi_get_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIChar_NA;
@ -1845,21 +1885,61 @@ obichar_t obi_column_get_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_col
}
int obi_column_set_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obichar_t value)
int obi_set_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obichar_t value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obichar_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_char_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
obichar_t obi_column_get_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
obichar_t obi_get_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIChar_NA;
return obi_column_get_obichar_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_char_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
int obi_set_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obichar_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_char_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obichar_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_char_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
obichar_t obi_get_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIChar_NA;
return obi_get_char_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
obichar_t obi_get_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIChar_NA;
return obi_get_char_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/
@ -1867,7 +1947,7 @@ obichar_t obi_column_get_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_co
/*********** FOR FLOAT COLUMNS ***********/
int obi_column_set_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obifloat_t value)
int obi_set_float_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obifloat_t value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -1875,7 +1955,7 @@ int obi_column_set_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
}
obifloat_t obi_column_get_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
obifloat_t obi_get_float_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIFloat_NA;
@ -1883,21 +1963,61 @@ obifloat_t obi_column_get_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_c
}
int obi_column_set_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obifloat_t value)
int obi_set_float_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obifloat_t value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obifloat_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_float_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
obifloat_t obi_column_get_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
obifloat_t obi_get_float_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIFloat_NA;
return obi_column_get_obifloat_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_float_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
int obi_set_float_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obifloat_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_float_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_float_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obifloat_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_float_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
obifloat_t obi_get_float_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIFloat_NA;
return obi_get_float_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
obifloat_t obi_get_float_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIFloat_NA;
return obi_get_float_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/
@ -1905,7 +2025,7 @@ obifloat_t obi_column_get_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_
/*********** FOR INT COLUMNS ***********/
int obi_column_set_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obiint_t value)
int obi_set_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obiint_t value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -1913,7 +2033,7 @@ int obi_column_set_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
}
obiint_t obi_column_get_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
obiint_t obi_get_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIInt_NA;
@ -1921,21 +2041,61 @@ obiint_t obi_column_get_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_colum
}
int obi_column_set_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obiint_t value)
int obi_set_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obiint_t value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obiint_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_int_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
obiint_t obi_column_get_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
obiint_t obi_get_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIInt_NA;
return obi_column_get_obiint_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_int_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
int obi_set_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obiint_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_int_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obiint_t value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_int_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
obiint_t obi_get_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIInt_NA;
return obi_get_int_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
obiint_t obi_get_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIInt_NA;
return obi_get_int_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/
@ -1943,7 +2103,7 @@ obiint_t obi_column_get_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_colu
/*********** FOR QUAL COLUMNS ***********/
int obi_column_set_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
int obi_set_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -1951,7 +2111,7 @@ int obi_column_set_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_colu
}
int obi_column_set_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length)
int obi_set_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -1959,7 +2119,7 @@ int obi_column_set_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_colum
}
char* obi_column_get_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
char* obi_get_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIQual_char_NA;
@ -1967,7 +2127,7 @@ char* obi_column_get_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_co
}
const uint8_t* obi_column_get_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, int* value_length)
const uint8_t* obi_get_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, int* value_length)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIQual_int_NA;
@ -1975,39 +2135,119 @@ const uint8_t* obi_column_get_obiqual_int_with_elt_idx_in_view(Obiview_p view, O
}
int obi_column_set_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
int obi_set_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obiqual_char_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_qual_char_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
int obi_column_set_obiqual_int_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const uint8_t* value, int value_length)
int obi_set_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const uint8_t* value, int value_length)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obiqual_int_with_elt_idx_in_view(view, column, line_nb, element_idx, value, value_length);
return obi_set_qual_int_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value, value_length);
}
char* obi_column_get_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
char* obi_get_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIQual_char_NA;
return obi_column_get_obiqual_char_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_qual_char_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
const uint8_t* obi_column_get_obiqual_int_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, int* value_length)
const uint8_t* obi_get_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, int* value_length)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIQual_int_NA;
return obi_column_get_obiqual_int_with_elt_idx_in_view(view, column, line_nb, element_idx, value_length);
return obi_get_qual_int_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value_length);
}
int obi_set_qual_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_qual_char_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_qual_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_qual_char_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
char* obi_get_qual_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIQual_char_NA;
return obi_get_qual_char_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
char* obi_get_qual_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIQual_char_NA;
return obi_get_qual_char_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
int obi_set_qual_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const uint8_t* value, int value_length)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_qual_int_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value, value_length);
}
int obi_set_qual_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_qual_int_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value, value_length);
}
const uint8_t* obi_get_qual_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, int* value_length)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIQual_int_NA;
return obi_get_qual_int_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value_length);
}
const uint8_t* obi_get_qual_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, int* value_length)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIQual_int_NA;
return obi_get_qual_int_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value_length);
}
/****************************************/
@ -2015,7 +2255,7 @@ const uint8_t* obi_column_get_obiqual_int_with_elt_name_in_view(Obiview_p view,
/*********** FOR SEQ COLUMNS ***********/
int obi_column_set_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
int obi_set_seq_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -2023,7 +2263,7 @@ int obi_column_set_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
}
char* obi_column_get_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
char* obi_get_seq_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBISeq_NA;
@ -2031,21 +2271,61 @@ char* obi_column_get_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
}
int obi_column_set_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
int obi_set_seq_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obiseq_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_seq_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
char* obi_column_get_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
char* obi_get_seq_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBISeq_NA;
return obi_column_get_obiseq_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_seq_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
int obi_set_seq_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_seq_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_seq_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_seq_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
char* obi_get_seq_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBISeq_NA;
return obi_get_seq_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
char* obi_get_seq_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBISeq_NA;
return obi_get_seq_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/
@ -2053,7 +2333,7 @@ char* obi_column_get_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_
/*********** FOR STR COLUMNS ***********/
int obi_column_set_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
int obi_set_str_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value)
{
if (prepare_to_set_value_in_column(view, &column, &line_nb) < 0)
return -1;
@ -2061,7 +2341,7 @@ int obi_column_set_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
}
const char* obi_column_get_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
const char* obi_get_str_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx)
{
if (prepare_to_get_value_from_column(view, &line_nb) < 0)
return OBIStr_NA;
@ -2069,21 +2349,61 @@ const char* obi_column_get_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_co
}
int obi_column_set_obistr_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
int obi_set_str_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return -1;
return obi_column_set_obistr_with_elt_idx_in_view(view, column, line_nb, element_idx, value);
return obi_set_str_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx, value);
}
const char* obi_column_get_obistr_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
const char* obi_get_str_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name)
{
index_t element_idx = obi_column_get_element_index_from_name(column, element_name);
if (element_idx == OBIIdx_NA)
return OBIStr_NA;
return obi_column_get_obistr_with_elt_idx_in_view(view, column, line_nb, element_idx);
return obi_get_str_with_elt_idx_and_col_p_in_view(view, column, line_nb, element_idx);
}
int obi_set_str_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_str_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name, value);
}
int obi_set_str_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return -1;
return obi_set_str_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx, value);
}
const char* obi_get_str_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIStr_NA;
return obi_get_str_with_elt_idx_and_col_p_in_view(view, column_p, line_nb, element_idx);
}
const char* obi_get_str_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name)
{
OBIDMS_column_p column_p;
column_p = obi_view_get_column(view, column_name);
if (column_p == NULL)
return OBIStr_NA;
return obi_get_str_with_elt_name_and_col_p_in_view(view, column_p, line_nb, element_name);
}
/****************************************/

201
src/obiview.h
View File

@ -489,9 +489,6 @@ int obi_close_view(Obiview_p view);
int obi_save_and_close_view(Obiview_p view);
// in following functions would it be better to use column names instead of column pointers?
// check if it would be a gain or loss of time
/**
* @brief Sets a value in an OBIDMS column containing data with the type OBI_BOOL, using the index of the element in the line,
* in the context of a view.
@ -499,7 +496,7 @@ int obi_save_and_close_view(Obiview_p view);
* Note: If the column is read-only or if there is a line selection associated with the view (making columns non-writable), it is cloned.
*
* @param view A pointer on the opened writable view.
* @param column A pointer on the column.
* @param column_p A pointer on the column.
* @param line_nb The number of the line where the value should be set.
* @param element_idx The index of the element that should be set in the line.
* @param value The value that should be set.
@ -511,14 +508,17 @@ int obi_save_and_close_view(Obiview_p view);
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obibool_t value);
int obi_set_bool_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, obibool_t value);
// TODO
int obi_set_bool_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obibool_t value);
/**
* @brief Recovers a value in an OBIDMS column containing data with the type OBI_BOOL, in the context of a view.
*
* @param view A pointer on the opened view.
* @param column A pointer on the column.
* @param column_p A pointer on the column.
* @param line_nb The number of the line where the value should be recovered.
* @param element_idx The index of the element that should be recovered in the line.
*
@ -528,7 +528,10 @@ int obi_column_set_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obibool_t obi_column_get_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
obibool_t obi_get_bool_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
obibool_t obi_get_bool_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -536,7 +539,7 @@ obibool_t obi_column_get_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_col
* using the name of the element in the line, in the context of a view.
*
* @param view A pointer on the opened writable view.
* @param column A pointer on the column.
* @param column_p A pointer on the column.
* @param line_nb The number of the line where the value should be set.
* @param element_name The name of the element that should be set in the line.
* @param value The value that should be set.
@ -548,7 +551,11 @@ obibool_t obi_column_get_obibool_with_elt_idx_in_view(Obiview_p view, OBIDMS_col
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obibool_t value);
int obi_set_bool_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, obibool_t value);
// TODO
int obi_set_bool_with_elt_name_and_column_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obibool_t value);
/**
@ -556,7 +563,7 @@ int obi_column_set_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* using the name of the element in the line, in the context of a view.
*
* @param view A pointer on the opened view.
* @param column A pointer on the column.
* @param column_p A pointer on the column.
* @param line_nb The number of the line where the value should be recovered.
* @param element_name The name of the element that should be recovered in the line.
*
@ -566,7 +573,11 @@ int obi_column_set_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obibool_t obi_column_get_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
obibool_t obi_get_bool_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
obibool_t obi_get_bool_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -588,7 +599,11 @@ obibool_t obi_column_get_obibool_with_elt_name_in_view(Obiview_p view, OBIDMS_co
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obichar_t value);
int obi_set_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, obichar_t value);
// TODO
int obi_set_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obichar_t value);
/**
@ -605,7 +620,11 @@ int obi_column_set_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obichar_t obi_column_get_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
obichar_t obi_get_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
obichar_t obi_get_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -625,7 +644,11 @@ obichar_t obi_column_get_obichar_with_elt_idx_in_view(Obiview_p view, OBIDMS_col
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obichar_t value);
int obi_set_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, obichar_t value);
// TODO
int obi_set_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obichar_t value);
/**
@ -643,7 +666,11 @@ int obi_column_set_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obichar_t obi_column_get_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
obichar_t obi_get_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
obichar_t obi_get_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -665,7 +692,11 @@ obichar_t obi_column_get_obichar_with_elt_name_in_view(Obiview_p view, OBIDMS_co
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obifloat_t value);
int obi_set_float_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, obifloat_t value);
// TODO
int obi_set_float_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obifloat_t value);
/**
@ -682,7 +713,11 @@ int obi_column_set_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obifloat_t obi_column_get_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
obifloat_t obi_get_float_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
obifloat_t obi_get_float_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -702,7 +737,11 @@ obifloat_t obi_column_get_obifloat_with_elt_idx_in_view(Obiview_p view, OBIDMS_c
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obifloat_t value);
int obi_set_float_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, obifloat_t value);
// TODO
int obi_set_float_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obifloat_t value);
/**
@ -720,7 +759,11 @@ int obi_column_set_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_column_
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obifloat_t obi_column_get_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
obifloat_t obi_get_float_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
obifloat_t obi_get_float_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -742,7 +785,11 @@ obifloat_t obi_column_get_obifloat_with_elt_name_in_view(Obiview_p view, OBIDMS_
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, obiint_t value);
int obi_set_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, obiint_t value);
// TODO
int obi_set_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, obiint_t value);
/**
@ -759,7 +806,11 @@ int obi_column_set_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obiint_t obi_column_get_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
obiint_t obi_get_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
obiint_t obi_get_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -779,7 +830,11 @@ obiint_t obi_column_get_obiint_with_elt_idx_in_view(Obiview_p view, OBIDMS_colum
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, obiint_t value);
int obi_set_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, obiint_t value);
// TODO
int obi_set_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, obiint_t value);
/**
@ -797,7 +852,11 @@ int obi_column_set_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
obiint_t obi_column_get_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
obiint_t obi_get_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
obiint_t obi_get_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -822,7 +881,11 @@ obiint_t obi_column_get_obiint_with_elt_name_in_view(Obiview_p view, OBIDMS_colu
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value);
int obi_set_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, const char* value);
// TODO
int obi_set_qual_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value);
/**
@ -848,7 +911,11 @@ int obi_column_set_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_colu
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length);
int obi_set_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length);
// TODO
int obi_set_qual_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const uint8_t* value, int value_length);
/**
@ -869,7 +936,11 @@ int obi_column_set_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_colum
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
char* obi_column_get_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
char* obi_get_qual_char_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
char* obi_get_qual_char_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -891,7 +962,11 @@ char* obi_column_get_obiqual_char_with_elt_idx_in_view(Obiview_p view, OBIDMS_co
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
const uint8_t* obi_column_get_obiqual_int_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, int* value_length);
const uint8_t* obi_get_qual_int_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, int* value_length);
// TODO
const uint8_t* obi_get_qual_int_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, int* value_length);
/**
@ -916,7 +991,11 @@ const uint8_t* obi_column_get_obiqual_int_with_elt_idx_in_view(Obiview_p view, O
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value);
int obi_set_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, const char* value);
// TODO
int obi_set_qual_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value);
/**
@ -942,7 +1021,11 @@ int obi_column_set_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_col
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiqual_int_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const uint8_t* value, int value_length);
int obi_set_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, const uint8_t* value, int value_length);
// TODO
int obi_set_qual_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const uint8_t* value, int value_length);
/**
@ -963,7 +1046,11 @@ int obi_column_set_obiqual_int_with_elt_name_in_view(Obiview_p view, OBIDMS_colu
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
char* obi_column_get_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
char* obi_get_qual_char_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
char* obi_get_qual_char_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -985,7 +1072,11 @@ char* obi_column_get_obiqual_char_with_elt_name_in_view(Obiview_p view, OBIDMS_c
* @since May 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
const uint8_t* obi_column_get_obiqual_int_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, int* value_length);
const uint8_t* obi_get_qual_int_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, int* value_length);
// TODO
const uint8_t* obi_get_qual_int_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, int* value_length);
/**
@ -1007,7 +1098,11 @@ const uint8_t* obi_column_get_obiqual_int_with_elt_name_in_view(Obiview_p view,
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value);
int obi_set_seq_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, const char* value);
// TODO
int obi_set_seq_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value);
/**
@ -1024,7 +1119,11 @@ int obi_column_set_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
char* obi_column_get_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
char* obi_get_seq_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
char* obi_get_seq_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -1044,7 +1143,11 @@ char* obi_column_get_obiseq_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value);
int obi_set_seq_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, const char* value);
// TODO
int obi_set_seq_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value);
/**
@ -1062,7 +1165,11 @@ int obi_column_set_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
char* obi_column_get_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
char* obi_get_seq_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
char* obi_get_seq_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
/**
@ -1084,7 +1191,11 @@ char* obi_column_get_obiseq_with_elt_name_in_view(Obiview_p view, OBIDMS_column_
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx, const char* value);
int obi_set_str_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx, const char* value);
// TODO
int obi_set_str_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx, const char* value);
/**
@ -1101,7 +1212,11 @@ int obi_column_set_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p c
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
const char* obi_column_get_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, index_t element_idx);
const char* obi_get_str_with_elt_idx_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, index_t element_idx);
// TODO
const char* obi_get_str_with_elt_idx_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, index_t element_idx);
/**
@ -1121,7 +1236,11 @@ const char* obi_column_get_obistr_with_elt_idx_in_view(Obiview_p view, OBIDMS_co
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
int obi_column_set_obistr_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name, const char* value);
int obi_set_str_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name, const char* value);
// TODO
int obi_set_str_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name, const char* value);
/**
@ -1139,7 +1258,11 @@ int obi_column_set_obistr_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p
* @since February 2016
* @author Celine Mercier (celine.mercier@metabarcoding.org)
*/
const char* obi_column_get_obistr_with_elt_name_in_view(Obiview_p view, OBIDMS_column_p column, index_t line_nb, const char* element_name);
const char* obi_get_str_with_elt_name_and_col_p_in_view(Obiview_p view, OBIDMS_column_p column_p, index_t line_nb, const char* element_name);
// TODO
const char* obi_get_str_with_elt_name_and_col_name_in_view(Obiview_p view, const char* column_name, index_t line_nb, const char* element_name);
#endif /* OBIVIEW_H_ */