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obi test: minor change

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Celine Mercier
2018-05-17 14:54:45 +02:00
parent a166a169cf
commit 31d8ba5085
1 changed files with 7 additions and 4 deletions
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11
python/obitools3/commands/test.pyx
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@ -13,6 +13,13 @@ from obitools3.dms.capi.obitypes cimport OBI_INT, \
OBI_CHAR, \ OBI_CHAR, \
OBI_STR, \ OBI_STR, \
OBI_SEQ OBI_SEQ
from obitools3.dms.capi.obiview cimport NUC_SEQUENCE_COLUMN, \
ID_COLUMN, \
DEFINITION_COLUMN, \
QUALITY_COLUMN, \
COUNT_COLUMN
import shutil import shutil
import string import string
import random import random
@ -20,10 +27,6 @@ import random
VIEW_TYPES = [b"", b"NUC_SEQS_VIEW"] VIEW_TYPES = [b"", b"NUC_SEQS_VIEW"]
COL_TYPES = [OBI_INT, OBI_FLOAT, OBI_BOOL, OBI_CHAR, OBI_STR, OBI_SEQ] COL_TYPES = [OBI_INT, OBI_FLOAT, OBI_BOOL, OBI_CHAR, OBI_STR, OBI_SEQ]
NUC_SEQUENCE_COLUMN = b"NUC_SEQ"
ID_COLUMN = b"ID"
DEFINITION_COLUMN = b"DEFINITION"
QUALITY_COLUMN = b"QUALITY"
SPECIAL_COLUMNS = [NUC_SEQUENCE_COLUMN, ID_COLUMN, DEFINITION_COLUMN, QUALITY_COLUMN] SPECIAL_COLUMNS = [NUC_SEQUENCE_COLUMN, ID_COLUMN, DEFINITION_COLUMN, QUALITY_COLUMN]
#TAXDUMP = "" TODO path=? #TAXDUMP = "" TODO path=?