remove all the no more needed .cfiles
This commit is contained in:
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,103 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../src/obi_lcs.h
|
|
||||||
../../../../src/obi_lcs.c
|
|
||||||
../../../../src/obierrno.h
|
|
||||||
../../../../src/obierrno.c
|
|
||||||
../../../../src/upperband.h
|
|
||||||
../../../../src/upperband.c
|
|
||||||
../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../src/obiblob.h
|
|
||||||
../../../../src/obiblob.c
|
|
||||||
../../../../src/utils.h
|
|
||||||
../../../../src/utils.c
|
|
||||||
../../../../src/obidms.h
|
|
||||||
../../../../src/obidms.c
|
|
||||||
../../../../src/libjson/json_utils.h
|
|
||||||
../../../../src/libjson/json_utils.c
|
|
||||||
../../../../src/libjson/cJSON.h
|
|
||||||
../../../../src/libjson/cJSON.c
|
|
||||||
../../../../src/obiavl.h
|
|
||||||
../../../../src/obiavl.c
|
|
||||||
../../../../src/bloom.h
|
|
||||||
../../../../src/bloom.c
|
|
||||||
../../../../src/crc64.h
|
|
||||||
../../../../src/crc64.c
|
|
||||||
../../../../src/murmurhash2.h
|
|
||||||
../../../../src/murmurhash2.c
|
|
||||||
../../../../src/obidmscolumn.h
|
|
||||||
../../../../src/obidmscolumn.c
|
|
||||||
../../../../src/obitypes.h
|
|
||||||
../../../../src/obitypes.c
|
|
||||||
../../../../src/obidmscolumndir.h
|
|
||||||
../../../../src/obidmscolumndir.c
|
|
||||||
../../../../src/obiblob_indexer.h
|
|
||||||
../../../../src/obiblob_indexer.c
|
|
||||||
../../../../src/obiview.h
|
|
||||||
../../../../src/obiview.c
|
|
||||||
../../../../src/hashtable.h
|
|
||||||
../../../../src/hashtable.c
|
|
||||||
../../../../src/linked_list.h
|
|
||||||
../../../../src/linked_list.c
|
|
||||||
../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../src/array_indexer.h
|
|
||||||
../../../../src/array_indexer.c
|
|
||||||
../../../../src/char_str_indexer.h
|
|
||||||
../../../../src/char_str_indexer.c
|
|
||||||
../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../src/encode.c
|
|
||||||
../../../../src/encode.h
|
|
||||||
../../../../src/uint8_indexer.c
|
|
||||||
../../../../src/uint8_indexer.h
|
|
||||||
../../../../src/build_reference_db.c
|
|
||||||
../../../../src/build_reference_db.h
|
|
||||||
../../../../src/kmer_similarity.c
|
|
||||||
../../../../src/kmer_similarity.h
|
|
||||||
../../../../src/obi_clean.c
|
|
||||||
../../../../src/obi_clean.h
|
|
||||||
../../../../src/obi_ecopcr.c
|
|
||||||
../../../../src/obi_ecopcr.h
|
|
||||||
../../../../src/obi_ecotag.c
|
|
||||||
../../../../src/obi_ecotag.h
|
|
||||||
../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../src/obilittlebigman.c
|
|
||||||
../../../../src/obilittlebigman.h
|
|
||||||
../../../../src/_sse.h
|
|
||||||
../../../../src/obidebug.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../src/obi_lcs.h
|
|
||||||
../../../../src/obi_lcs.c
|
|
||||||
../../../../src/obierrno.h
|
|
||||||
../../../../src/obierrno.c
|
|
||||||
../../../../src/upperband.h
|
|
||||||
../../../../src/upperband.c
|
|
||||||
../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../src/obiblob.h
|
|
||||||
../../../../src/obiblob.c
|
|
||||||
../../../../src/utils.h
|
|
||||||
../../../../src/utils.c
|
|
||||||
../../../../src/obidms.h
|
|
||||||
../../../../src/obidms.c
|
|
||||||
../../../../src/libjson/json_utils.h
|
|
||||||
../../../../src/libjson/json_utils.c
|
|
||||||
../../../../src/libjson/cJSON.h
|
|
||||||
../../../../src/libjson/cJSON.c
|
|
||||||
../../../../src/obiavl.h
|
|
||||||
../../../../src/obiavl.c
|
|
||||||
../../../../src/bloom.h
|
|
||||||
../../../../src/bloom.c
|
|
||||||
../../../../src/crc64.h
|
|
||||||
../../../../src/crc64.c
|
|
||||||
../../../../src/murmurhash2.h
|
|
||||||
../../../../src/murmurhash2.c
|
|
||||||
../../../../src/obidmscolumn.h
|
|
||||||
../../../../src/obidmscolumn.c
|
|
||||||
../../../../src/obitypes.h
|
|
||||||
../../../../src/obitypes.c
|
|
||||||
../../../../src/obidmscolumndir.h
|
|
||||||
../../../../src/obidmscolumndir.c
|
|
||||||
../../../../src/obiblob_indexer.h
|
|
||||||
../../../../src/obiblob_indexer.c
|
|
||||||
../../../../src/obiview.h
|
|
||||||
../../../../src/obiview.c
|
|
||||||
../../../../src/hashtable.h
|
|
||||||
../../../../src/hashtable.c
|
|
||||||
../../../../src/linked_list.h
|
|
||||||
../../../../src/linked_list.c
|
|
||||||
../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../src/array_indexer.h
|
|
||||||
../../../../src/array_indexer.c
|
|
||||||
../../../../src/char_str_indexer.h
|
|
||||||
../../../../src/char_str_indexer.c
|
|
||||||
../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../src/encode.c
|
|
||||||
../../../../src/encode.h
|
|
||||||
../../../../src/uint8_indexer.c
|
|
||||||
../../../../src/uint8_indexer.h
|
|
||||||
../../../../src/build_reference_db.c
|
|
||||||
../../../../src/build_reference_db.h
|
|
||||||
../../../../src/kmer_similarity.c
|
|
||||||
../../../../src/kmer_similarity.h
|
|
||||||
../../../../src/obi_clean.c
|
|
||||||
../../../../src/obi_clean.h
|
|
||||||
../../../../src/obi_ecopcr.c
|
|
||||||
../../../../src/obi_ecopcr.h
|
|
||||||
../../../../src/obi_ecotag.c
|
|
||||||
../../../../src/obi_ecotag.h
|
|
||||||
../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../src/obilittlebigman.c
|
|
||||||
../../../../src/obilittlebigman.h
|
|
||||||
../../../../src/_sse.h
|
|
||||||
../../../../src/obidebug.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../src/obi_lcs.h
|
|
||||||
../../../../src/obi_lcs.c
|
|
||||||
../../../../src/obierrno.h
|
|
||||||
../../../../src/obierrno.c
|
|
||||||
../../../../src/upperband.h
|
|
||||||
../../../../src/upperband.c
|
|
||||||
../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../src/obiblob.h
|
|
||||||
../../../../src/obiblob.c
|
|
||||||
../../../../src/utils.h
|
|
||||||
../../../../src/utils.c
|
|
||||||
../../../../src/obidms.h
|
|
||||||
../../../../src/obidms.c
|
|
||||||
../../../../src/libjson/json_utils.h
|
|
||||||
../../../../src/libjson/json_utils.c
|
|
||||||
../../../../src/libjson/cJSON.h
|
|
||||||
../../../../src/libjson/cJSON.c
|
|
||||||
../../../../src/obiavl.h
|
|
||||||
../../../../src/obiavl.c
|
|
||||||
../../../../src/bloom.h
|
|
||||||
../../../../src/bloom.c
|
|
||||||
../../../../src/crc64.h
|
|
||||||
../../../../src/crc64.c
|
|
||||||
../../../../src/murmurhash2.h
|
|
||||||
../../../../src/murmurhash2.c
|
|
||||||
../../../../src/obidmscolumn.h
|
|
||||||
../../../../src/obidmscolumn.c
|
|
||||||
../../../../src/obitypes.h
|
|
||||||
../../../../src/obitypes.c
|
|
||||||
../../../../src/obidmscolumndir.h
|
|
||||||
../../../../src/obidmscolumndir.c
|
|
||||||
../../../../src/obiblob_indexer.h
|
|
||||||
../../../../src/obiblob_indexer.c
|
|
||||||
../../../../src/obiview.h
|
|
||||||
../../../../src/obiview.c
|
|
||||||
../../../../src/hashtable.h
|
|
||||||
../../../../src/hashtable.c
|
|
||||||
../../../../src/linked_list.h
|
|
||||||
../../../../src/linked_list.c
|
|
||||||
../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../src/array_indexer.h
|
|
||||||
../../../../src/array_indexer.c
|
|
||||||
../../../../src/char_str_indexer.h
|
|
||||||
../../../../src/char_str_indexer.c
|
|
||||||
../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../src/encode.c
|
|
||||||
../../../../src/encode.h
|
|
||||||
../../../../src/uint8_indexer.c
|
|
||||||
../../../../src/uint8_indexer.h
|
|
||||||
../../../../src/build_reference_db.c
|
|
||||||
../../../../src/build_reference_db.h
|
|
||||||
../../../../src/kmer_similarity.c
|
|
||||||
../../../../src/kmer_similarity.h
|
|
||||||
../../../../src/obi_clean.c
|
|
||||||
../../../../src/obi_clean.h
|
|
||||||
../../../../src/obi_ecopcr.c
|
|
||||||
../../../../src/obi_ecopcr.h
|
|
||||||
../../../../src/obi_ecotag.c
|
|
||||||
../../../../src/obi_ecotag.h
|
|
||||||
../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../src/obilittlebigman.c
|
|
||||||
../../../../src/obilittlebigman.h
|
|
||||||
../../../../src/_sse.h
|
|
||||||
../../../../src/obidebug.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../../src/obi_lcs.h
|
|
||||||
../../../../../src/obi_lcs.c
|
|
||||||
../../../../../src/obierrno.h
|
|
||||||
../../../../../src/obierrno.c
|
|
||||||
../../../../../src/upperband.h
|
|
||||||
../../../../../src/upperband.c
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../../src/obiblob.h
|
|
||||||
../../../../../src/obiblob.c
|
|
||||||
../../../../../src/utils.h
|
|
||||||
../../../../../src/utils.c
|
|
||||||
../../../../../src/obidms.h
|
|
||||||
../../../../../src/obidms.c
|
|
||||||
../../../../../src/libjson/json_utils.h
|
|
||||||
../../../../../src/libjson/json_utils.c
|
|
||||||
../../../../../src/libjson/cJSON.h
|
|
||||||
../../../../../src/libjson/cJSON.c
|
|
||||||
../../../../../src/obiavl.h
|
|
||||||
../../../../../src/obiavl.c
|
|
||||||
../../../../../src/bloom.h
|
|
||||||
../../../../../src/bloom.c
|
|
||||||
../../../../../src/crc64.h
|
|
||||||
../../../../../src/crc64.c
|
|
||||||
../../../../../src/murmurhash2.h
|
|
||||||
../../../../../src/murmurhash2.c
|
|
||||||
../../../../../src/obidmscolumn.h
|
|
||||||
../../../../../src/obidmscolumn.c
|
|
||||||
../../../../../src/obitypes.h
|
|
||||||
../../../../../src/obitypes.c
|
|
||||||
../../../../../src/obidmscolumndir.h
|
|
||||||
../../../../../src/obidmscolumndir.c
|
|
||||||
../../../../../src/obiblob_indexer.h
|
|
||||||
../../../../../src/obiblob_indexer.c
|
|
||||||
../../../../../src/obiview.h
|
|
||||||
../../../../../src/obiview.c
|
|
||||||
../../../../../src/hashtable.h
|
|
||||||
../../../../../src/hashtable.c
|
|
||||||
../../../../../src/linked_list.h
|
|
||||||
../../../../../src/linked_list.c
|
|
||||||
../../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../../src/array_indexer.h
|
|
||||||
../../../../../src/array_indexer.c
|
|
||||||
../../../../../src/char_str_indexer.h
|
|
||||||
../../../../../src/char_str_indexer.c
|
|
||||||
../../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../../src/encode.c
|
|
||||||
../../../../../src/encode.h
|
|
||||||
../../../../../src/uint8_indexer.c
|
|
||||||
../../../../../src/uint8_indexer.h
|
|
||||||
../../../../../src/build_reference_db.c
|
|
||||||
../../../../../src/build_reference_db.h
|
|
||||||
../../../../../src/kmer_similarity.c
|
|
||||||
../../../../../src/kmer_similarity.h
|
|
||||||
../../../../../src/obi_clean.c
|
|
||||||
../../../../../src/obi_clean.h
|
|
||||||
../../../../../src/obi_ecopcr.c
|
|
||||||
../../../../../src/obi_ecopcr.h
|
|
||||||
../../../../../src/obi_ecotag.c
|
|
||||||
../../../../../src/obi_ecotag.h
|
|
||||||
../../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../../src/obilittlebigman.c
|
|
||||||
../../../../../src/obilittlebigman.h
|
|
||||||
../../../../../src/_sse.h
|
|
||||||
../../../../../src/obidebug.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../../src/obi_lcs.h
|
|
||||||
../../../../src/obi_lcs.c
|
|
||||||
../../../../src/obierrno.h
|
|
||||||
../../../../src/obierrno.c
|
|
||||||
../../../../src/upperband.h
|
|
||||||
../../../../src/upperband.c
|
|
||||||
../../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../../src/obiblob.h
|
|
||||||
../../../../src/obiblob.c
|
|
||||||
../../../../src/utils.h
|
|
||||||
../../../../src/utils.c
|
|
||||||
../../../../src/obidms.h
|
|
||||||
../../../../src/obidms.c
|
|
||||||
../../../../src/libjson/json_utils.h
|
|
||||||
../../../../src/libjson/json_utils.c
|
|
||||||
../../../../src/libjson/cJSON.h
|
|
||||||
../../../../src/libjson/cJSON.c
|
|
||||||
../../../../src/obiavl.h
|
|
||||||
../../../../src/obiavl.c
|
|
||||||
../../../../src/bloom.h
|
|
||||||
../../../../src/bloom.c
|
|
||||||
../../../../src/crc64.h
|
|
||||||
../../../../src/crc64.c
|
|
||||||
../../../../src/murmurhash2.h
|
|
||||||
../../../../src/murmurhash2.c
|
|
||||||
../../../../src/obidmscolumn.h
|
|
||||||
../../../../src/obidmscolumn.c
|
|
||||||
../../../../src/obitypes.h
|
|
||||||
../../../../src/obitypes.c
|
|
||||||
../../../../src/obidmscolumndir.h
|
|
||||||
../../../../src/obidmscolumndir.c
|
|
||||||
../../../../src/obiblob_indexer.h
|
|
||||||
../../../../src/obiblob_indexer.c
|
|
||||||
../../../../src/obiview.h
|
|
||||||
../../../../src/obiview.c
|
|
||||||
../../../../src/hashtable.h
|
|
||||||
../../../../src/hashtable.c
|
|
||||||
../../../../src/linked_list.h
|
|
||||||
../../../../src/linked_list.c
|
|
||||||
../../../../src/obidmscolumn_array.h
|
|
||||||
../../../../src/obidmscolumn_array.c
|
|
||||||
../../../../src/obidmscolumn_blob.h
|
|
||||||
../../../../src/obidmscolumn_blob.c
|
|
||||||
../../../../src/obidmscolumn_idx.h
|
|
||||||
../../../../src/obidmscolumn_idx.c
|
|
||||||
../../../../src/obidmscolumn_bool.h
|
|
||||||
../../../../src/obidmscolumn_bool.c
|
|
||||||
../../../../src/obidmscolumn_char.h
|
|
||||||
../../../../src/obidmscolumn_char.c
|
|
||||||
../../../../src/obidmscolumn_float.h
|
|
||||||
../../../../src/obidmscolumn_float.c
|
|
||||||
../../../../src/obidmscolumn_int.h
|
|
||||||
../../../../src/obidmscolumn_int.c
|
|
||||||
../../../../src/obidmscolumn_qual.h
|
|
||||||
../../../../src/obidmscolumn_qual.c
|
|
||||||
../../../../src/obidmscolumn_seq.h
|
|
||||||
../../../../src/obidmscolumn_seq.c
|
|
||||||
../../../../src/obidmscolumn_str.h
|
|
||||||
../../../../src/obidmscolumn_str.c
|
|
||||||
../../../../src/array_indexer.h
|
|
||||||
../../../../src/array_indexer.c
|
|
||||||
../../../../src/char_str_indexer.h
|
|
||||||
../../../../src/char_str_indexer.c
|
|
||||||
../../../../src/dna_seq_indexer.h
|
|
||||||
../../../../src/dna_seq_indexer.c
|
|
||||||
../../../../src/encode.c
|
|
||||||
../../../../src/encode.h
|
|
||||||
../../../../src/uint8_indexer.c
|
|
||||||
../../../../src/uint8_indexer.h
|
|
||||||
../../../../src/build_reference_db.c
|
|
||||||
../../../../src/build_reference_db.h
|
|
||||||
../../../../src/kmer_similarity.c
|
|
||||||
../../../../src/kmer_similarity.h
|
|
||||||
../../../../src/obi_clean.c
|
|
||||||
../../../../src/obi_clean.h
|
|
||||||
../../../../src/obi_ecopcr.c
|
|
||||||
../../../../src/obi_ecopcr.h
|
|
||||||
../../../../src/obi_ecotag.c
|
|
||||||
../../../../src/obi_ecotag.h
|
|
||||||
../../../../src/obidms_taxonomy.c
|
|
||||||
../../../../src/obidms_taxonomy.h
|
|
||||||
../../../../src/obilittlebigman.c
|
|
||||||
../../../../src/obilittlebigman.h
|
|
||||||
../../../../src/_sse.h
|
|
||||||
../../../../src/obidebug.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../src/obi_lcs.h
|
|
||||||
../../src/obi_lcs.c
|
|
||||||
../../src/obierrno.h
|
|
||||||
../../src/obierrno.c
|
|
||||||
../../src/upperband.h
|
|
||||||
../../src/upperband.c
|
|
||||||
../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../src/obiblob.h
|
|
||||||
../../src/obiblob.c
|
|
||||||
../../src/utils.h
|
|
||||||
../../src/utils.c
|
|
||||||
../../src/obidms.h
|
|
||||||
../../src/obidms.c
|
|
||||||
../../src/libjson/json_utils.h
|
|
||||||
../../src/libjson/json_utils.c
|
|
||||||
../../src/libjson/cJSON.h
|
|
||||||
../../src/libjson/cJSON.c
|
|
||||||
../../src/obiavl.h
|
|
||||||
../../src/obiavl.c
|
|
||||||
../../src/bloom.h
|
|
||||||
../../src/bloom.c
|
|
||||||
../../src/crc64.h
|
|
||||||
../../src/crc64.c
|
|
||||||
../../src/murmurhash2.h
|
|
||||||
../../src/murmurhash2.c
|
|
||||||
../../src/obidmscolumn.h
|
|
||||||
../../src/obidmscolumn.c
|
|
||||||
../../src/obitypes.h
|
|
||||||
../../src/obitypes.c
|
|
||||||
../../src/obidmscolumndir.h
|
|
||||||
../../src/obidmscolumndir.c
|
|
||||||
../../src/obiblob_indexer.h
|
|
||||||
../../src/obiblob_indexer.c
|
|
||||||
../../src/obiview.h
|
|
||||||
../../src/obiview.c
|
|
||||||
../../src/hashtable.h
|
|
||||||
../../src/hashtable.c
|
|
||||||
../../src/linked_list.h
|
|
||||||
../../src/linked_list.c
|
|
||||||
../../src/obidmscolumn_array.h
|
|
||||||
../../src/obidmscolumn_array.c
|
|
||||||
../../src/obidmscolumn_blob.h
|
|
||||||
../../src/obidmscolumn_blob.c
|
|
||||||
../../src/obidmscolumn_idx.h
|
|
||||||
../../src/obidmscolumn_idx.c
|
|
||||||
../../src/obidmscolumn_bool.h
|
|
||||||
../../src/obidmscolumn_bool.c
|
|
||||||
../../src/obidmscolumn_char.h
|
|
||||||
../../src/obidmscolumn_char.c
|
|
||||||
../../src/obidmscolumn_float.h
|
|
||||||
../../src/obidmscolumn_float.c
|
|
||||||
../../src/obidmscolumn_int.h
|
|
||||||
../../src/obidmscolumn_int.c
|
|
||||||
../../src/obidmscolumn_qual.h
|
|
||||||
../../src/obidmscolumn_qual.c
|
|
||||||
../../src/obidmscolumn_seq.h
|
|
||||||
../../src/obidmscolumn_seq.c
|
|
||||||
../../src/obidmscolumn_str.h
|
|
||||||
../../src/obidmscolumn_str.c
|
|
||||||
../../src/array_indexer.h
|
|
||||||
../../src/array_indexer.c
|
|
||||||
../../src/char_str_indexer.h
|
|
||||||
../../src/char_str_indexer.c
|
|
||||||
../../src/dna_seq_indexer.h
|
|
||||||
../../src/dna_seq_indexer.c
|
|
||||||
../../src/encode.c
|
|
||||||
../../src/encode.h
|
|
||||||
../../src/uint8_indexer.c
|
|
||||||
../../src/uint8_indexer.h
|
|
||||||
../../src/build_reference_db.c
|
|
||||||
../../src/build_reference_db.h
|
|
||||||
../../src/kmer_similarity.c
|
|
||||||
../../src/kmer_similarity.h
|
|
||||||
../../src/obi_clean.c
|
|
||||||
../../src/obi_clean.h
|
|
||||||
../../src/obi_ecopcr.c
|
|
||||||
../../src/obi_ecopcr.h
|
|
||||||
../../src/obi_ecotag.c
|
|
||||||
../../src/obi_ecotag.h
|
|
||||||
../../src/obidms_taxonomy.c
|
|
||||||
../../src/obidms_taxonomy.h
|
|
||||||
../../src/obilittlebigman.c
|
|
||||||
../../src/obilittlebigman.h
|
|
||||||
../../src/_sse.h
|
|
||||||
../../src/obidebug.h
|
|
||||||
../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../src/libecoPCR/ecoapat.c
|
|
||||||
../../src/libecoPCR/ecodna.c
|
|
||||||
../../src/libecoPCR/ecoError.c
|
|
||||||
../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
@ -1,110 +0,0 @@
|
|||||||
../../../src/obi_lcs.h
|
|
||||||
../../../src/obi_lcs.c
|
|
||||||
../../../src/obierrno.h
|
|
||||||
../../../src/obierrno.c
|
|
||||||
../../../src/upperband.h
|
|
||||||
../../../src/upperband.c
|
|
||||||
../../../src/sse_banded_LCS_alignment.h
|
|
||||||
../../../src/sse_banded_LCS_alignment.c
|
|
||||||
../../../src/obiblob.h
|
|
||||||
../../../src/obiblob.c
|
|
||||||
../../../src/utils.h
|
|
||||||
../../../src/utils.c
|
|
||||||
../../../src/obidms.h
|
|
||||||
../../../src/obidms.c
|
|
||||||
../../../src/libjson/json_utils.h
|
|
||||||
../../../src/libjson/json_utils.c
|
|
||||||
../../../src/libjson/cJSON.h
|
|
||||||
../../../src/libjson/cJSON.c
|
|
||||||
../../../src/obiavl.h
|
|
||||||
../../../src/obiavl.c
|
|
||||||
../../../src/bloom.h
|
|
||||||
../../../src/bloom.c
|
|
||||||
../../../src/crc64.h
|
|
||||||
../../../src/crc64.c
|
|
||||||
../../../src/murmurhash2.h
|
|
||||||
../../../src/murmurhash2.c
|
|
||||||
../../../src/obidmscolumn.h
|
|
||||||
../../../src/obidmscolumn.c
|
|
||||||
../../../src/obitypes.h
|
|
||||||
../../../src/obitypes.c
|
|
||||||
../../../src/obidmscolumndir.h
|
|
||||||
../../../src/obidmscolumndir.c
|
|
||||||
../../../src/obiblob_indexer.h
|
|
||||||
../../../src/obiblob_indexer.c
|
|
||||||
../../../src/obiview.h
|
|
||||||
../../../src/obiview.c
|
|
||||||
../../../src/hashtable.h
|
|
||||||
../../../src/hashtable.c
|
|
||||||
../../../src/linked_list.h
|
|
||||||
../../../src/linked_list.c
|
|
||||||
../../../src/obidmscolumn_array.h
|
|
||||||
../../../src/obidmscolumn_array.c
|
|
||||||
../../../src/obidmscolumn_blob.h
|
|
||||||
../../../src/obidmscolumn_blob.c
|
|
||||||
../../../src/obidmscolumn_idx.h
|
|
||||||
../../../src/obidmscolumn_idx.c
|
|
||||||
../../../src/obidmscolumn_bool.h
|
|
||||||
../../../src/obidmscolumn_bool.c
|
|
||||||
../../../src/obidmscolumn_char.h
|
|
||||||
../../../src/obidmscolumn_char.c
|
|
||||||
../../../src/obidmscolumn_float.h
|
|
||||||
../../../src/obidmscolumn_float.c
|
|
||||||
../../../src/obidmscolumn_int.h
|
|
||||||
../../../src/obidmscolumn_int.c
|
|
||||||
../../../src/obidmscolumn_qual.h
|
|
||||||
../../../src/obidmscolumn_qual.c
|
|
||||||
../../../src/obidmscolumn_seq.h
|
|
||||||
../../../src/obidmscolumn_seq.c
|
|
||||||
../../../src/obidmscolumn_str.h
|
|
||||||
../../../src/obidmscolumn_str.c
|
|
||||||
../../../src/array_indexer.h
|
|
||||||
../../../src/array_indexer.c
|
|
||||||
../../../src/char_str_indexer.h
|
|
||||||
../../../src/char_str_indexer.c
|
|
||||||
../../../src/dna_seq_indexer.h
|
|
||||||
../../../src/dna_seq_indexer.c
|
|
||||||
../../../src/encode.c
|
|
||||||
../../../src/encode.h
|
|
||||||
../../../src/uint8_indexer.c
|
|
||||||
../../../src/uint8_indexer.h
|
|
||||||
../../../src/build_reference_db.c
|
|
||||||
../../../src/build_reference_db.h
|
|
||||||
../../../src/kmer_similarity.c
|
|
||||||
../../../src/kmer_similarity.h
|
|
||||||
../../../src/obi_clean.c
|
|
||||||
../../../src/obi_clean.h
|
|
||||||
../../../src/obi_ecopcr.c
|
|
||||||
../../../src/obi_ecopcr.h
|
|
||||||
../../../src/obi_ecotag.c
|
|
||||||
../../../src/obi_ecotag.h
|
|
||||||
../../../src/obidms_taxonomy.c
|
|
||||||
../../../src/obidms_taxonomy.h
|
|
||||||
../../../src/obilittlebigman.c
|
|
||||||
../../../src/obilittlebigman.h
|
|
||||||
../../../src/_sse.h
|
|
||||||
../../../src/obidebug.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dft_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/dna_code.h
|
|
||||||
../../../src/libecoPCR/libapat/CODES/prot_code.h
|
|
||||||
../../../src/libecoPCR/libapat/apat_parse.c
|
|
||||||
../../../src/libecoPCR/libapat/apat_search.c
|
|
||||||
../../../src/libecoPCR/libapat/apat.h
|
|
||||||
../../../src/libecoPCR/libapat/Gmach.h
|
|
||||||
../../../src/libecoPCR/libapat/Gtypes.h
|
|
||||||
../../../src/libecoPCR/libapat/libstki.c
|
|
||||||
../../../src/libecoPCR/libapat/libstki.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.h
|
|
||||||
../../../src/libecoPCR/libthermo/nnparams.c
|
|
||||||
../../../src/libecoPCR/ecoapat.c
|
|
||||||
../../../src/libecoPCR/ecodna.c
|
|
||||||
../../../src/libecoPCR/ecoError.c
|
|
||||||
../../../src/libecoPCR/ecoMalloc.c
|
|
||||||
../../../src/libecoPCR/ecoPCR.h
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
Reference in New Issue
Block a user