Cython: minor fixes

2018-10-17 11:26:13 +02:00
parent ec73fa840a
commit 6a8670d24a
2 changed files with 2 additions and 2 deletions
--- a/python/obitools3/dms/taxo/taxo.pyx
+++ b/python/obitools3/dms/taxo/taxo.pyx
@ -110,7 +110,7 @@ cdef class Taxonomy(OBIWrapper) :
        if type(ref) == int :
            return self.get_taxon_by_taxid(ref)
        else :
-            raise Exception("Not implemented")
+            raise NotImplementedError()


    cpdef Taxon get_taxon_by_taxid(self, int taxid):   # TODO check deleted taxon behavior (403122)
--- a/python/obitools3/parsers/fasta.pyx
+++ b/python/obitools3/parsers/fasta.pyx
@ -101,7 +101,7 @@ def fastaNucIterator(lineiterator,
    cdef dict       tags
    cdef list       s
    cdef bytes      sequence
-    cdef int        lines_to_skip, ionly, read
+    cdef int        skipped, ionly, read
    cdef Nuc_Seq    seq
    
    if only is None: