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Cython: minor fixes

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This commit is contained in:
Celine Mercier
2018-10-17 11:26:13 +02:00
parent ec73fa840a
commit 6a8670d24a
2 changed files with 2 additions and 2 deletions
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2
python/obitools3/dms/taxo/taxo.pyx
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@ -110,7 +110,7 @@ cdef class Taxonomy(OBIWrapper) :
if type(ref) == int : if type(ref) == int :
return self.get_taxon_by_taxid(ref) return self.get_taxon_by_taxid(ref)
else : else :
raise Exception("Not implemented") raise NotImplementedError()
cpdef Taxon get_taxon_by_taxid(self, int taxid): # TODO check deleted taxon behavior (403122) cpdef Taxon get_taxon_by_taxid(self, int taxid): # TODO check deleted taxon behavior (403122)

2
python/obitools3/parsers/fasta.pyx
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@ -101,7 +101,7 @@ def fastaNucIterator(lineiterator,
cdef dict tags cdef dict tags
cdef list s cdef list s
cdef bytes sequence cdef bytes sequence
cdef int lines_to_skip, ionly, read cdef int skipped, ionly, read
cdef Nuc_Seq seq cdef Nuc_Seq seq
if only is None: if only is None: