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Export options: output option is now only non-positional for obi export

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This commit is contained in:
Celine Mercier
2019-09-17 13:19:17 +02:00
parent 0159385943
commit 9063e9159d
1 changed files with 6 additions and 2 deletions
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8
python/obitools3/apps/optiongroups/__init__.py
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@ -210,7 +210,7 @@ def addAllInputOption(optionManager):
def __addOutputOption(optionManager): def __addOutputOption(optionManager):
optionManager.add_argument('-o', optionManager.add_argument(
dest='obi:outputURI', dest='obi:outputURI',
metavar='OUTPUT', metavar='OUTPUT',
help='Data destination URI') help='Data destination URI')
@ -238,6 +238,11 @@ def __addDMSOutputOption(optionManager):
def __addExportOutputOption(optionManager): def __addExportOutputOption(optionManager):
group = optionManager.add_argument_group("Output format options for exported files") group = optionManager.add_argument_group("Output format options for exported files")
group.add_argument('-o',
dest='obi:outputURI',
metavar='OUTPUT',
help='Data destination URI')
group.add_argument('--fasta-output', group.add_argument('--fasta-output',
action="store_const", dest="obi:outputformat", action="store_const", dest="obi:outputformat",
default=None, default=None,
@ -287,7 +292,6 @@ def addTabularOutputOption(optionManager):
def addExportOutputOption(optionManager): def addExportOutputOption(optionManager):
__addOutputOption(optionManager)
__addExportOutputOption(optionManager) __addExportOutputOption(optionManager)
__addTabularOption(optionManager) __addTabularOption(optionManager)