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import: improved genbank parser and switch to version 3.0.1.b10

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mercierc
2021-06-17 08:42:01 +12:00
parent 8ec13a294c
commit 9334cf6cc6
2 changed files with 2 additions and 2 deletions
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2
python/obitools3/parsers/genbank.pyx
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@ -25,7 +25,7 @@ from libc.string cimport strcpy, strlen
_featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN )',re.DOTALL + re.M) _featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN )',re.DOTALL + re.M)
_headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M) _headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M)
_seqMatcher = re.compile(b'ORIGIN .+(?=//\n)', re.DOTALL + re.M) _seqMatcher = re.compile(b'^ORIGIN .+(?=//\n)', re.DOTALL + re.M)
_cleanSeq1 = re.compile(b'ORIGIN.+\n') _cleanSeq1 = re.compile(b'ORIGIN.+\n')
_cleanSeq2 = re.compile(b'[ \n0-9]+') _cleanSeq2 = re.compile(b'[ \n0-9]+')
_acMatcher = re.compile(b'(?<=^ACCESSION ).+',re.M) _acMatcher = re.compile(b'(?<=^ACCESSION ).+',re.M)

2
python/obitools3/version.py
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@ -1,5 +1,5 @@
major = 3 major = 3
minor = 0 minor = 0
serial= '1b9' serial= '1b10'
version ="%d.%d.%s" % (major,minor,serial) version ="%d.%d.%s" % (major,minor,serial)