obi import: removed old traces
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@ -90,8 +90,6 @@ def run(config):
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input = open_uri(config['obi']['inputURI'])
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print(input)
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if input[2]==Nuc_Seq:
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v = View_NUC_SEQS
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else:
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@ -105,8 +103,8 @@ def run(config):
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if output is None:
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raise Exception("Could not create output view")
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print("input:", input)
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print("output:", output)
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#print("input:", input)
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#print("output:", output)
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pb = ProgressBar(1000000, config, seconde=5) # TODO should be number of records in file
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@ -141,7 +139,6 @@ def run(config):
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if i == 0:
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get_quality = b"QUALITY" in seq
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if get_quality:
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print("yah")
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Column.new_column(view, b"QUALITY", OBI_QUAL)
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qual_col = view[b"QUALITY"]
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