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Minor fixes

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This commit is contained in:
Celine Mercier
2018-11-07 16:04:17 +01:00
parent 75a28929a7
commit d1f1fd432e
2 changed files with 2 additions and 3 deletions
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1
python/obitools3/commands/clean.pyx
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@ -2,7 +2,6 @@
from obitools3.apps.progress cimport ProgressBar # @UnresolvedImport from obitools3.apps.progress cimport ProgressBar # @UnresolvedImport
from obitools3.dms.dms cimport DMS from obitools3.dms.dms cimport DMS
from obitools3.dms.capi.obidms cimport OBIDMS_p
from obitools3.dms.view import RollbackException from obitools3.dms.view import RollbackException
from obitools3.dms.capi.obiclean cimport obi_clean from obitools3.dms.capi.obiclean cimport obi_clean
from obitools3.apps.optiongroups import addMinimalInputOption, addMinimalOutputOption from obitools3.apps.optiongroups import addMinimalInputOption, addMinimalOutputOption

4
src/upperband.c
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@ -230,7 +230,7 @@ int thresholdLCS4(int32_t reflen, int32_t lcs)
} }
Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_align.c) Kmer_table_p hash_seq_column(Obiview_p view, OBIDMS_column_p seq_col, index_t seq_idx) // TODO move in another file (obi_lcs.c?)
{ {
size_t i; size_t i;
size_t seq_count; size_t seq_count;
@ -347,7 +347,7 @@ void align_filters(Kmer_table_p ktable, Obi_blob_p seq1, Obi_blob_p seq2, index_
double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin, double threshold, bool normalize, int reference, bool similarity_mode, double* score, int* LCSmin,
bool can_be_identical) bool can_be_identical)
{ // score takes value -2 if filters are not passed, -1 if filters are passed and >= 0 with max score if the 2 sequences are identical. { // score takes value -2 if filters are not passed, -1 if filters are passed and >= 0 with max score if the 2 sequences are identical.
// TODO move to obi_align.c // TODO move to obi_lcs.c?
int l1; int l1;
int l2; int l2;