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187053026f
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Better detection of missing taxonomy
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2019-08-29 16:10:09 +02:00 |
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dcf8cf1d64
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Improved obi stats
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2019-08-29 15:18:26 +02:00 |
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3cfe3a9b00
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Improved progress display when importing files in a DMS
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2019-08-29 10:12:06 +02:00 |
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728af51cb2
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Python: better display of tuple values in fasta format
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2019-08-28 15:55:36 +02:00 |
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99a397b842
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obi uniq: various improvements and fixes #66
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2019-08-27 20:27:36 +02:00 |
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f5c472ffd1
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C: fixed a memory bug in the array indexer
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2019-08-27 20:26:46 +02:00 |
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580db2f710
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minor comment
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2019-08-27 20:25:54 +02:00 |
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dbe09f83a2
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Increased the threshold of elements per line in a column before they are
stored as a character string
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2019-08-27 20:25:14 +02:00 |
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3d1b2e8ed9
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Better handling of column lines with all values at NA
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2019-08-27 20:20:26 +02:00 |
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ae5f42c260
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fixes #61 : now reading merged taxids information when building a
reference database
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2019-08-19 12:30:56 +02:00 |
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af7cecf59f
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Fixed a bug where a directory was not closed properly resulting in errno
24 sometimes
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2019-08-18 19:46:52 +02:00 |
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5f20be44b2
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Minor fixes
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2019-08-18 19:45:53 +02:00 |
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66441e0aef
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Fixed a bug when sending a DMS path to a C function from Cython
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2019-08-18 19:43:51 +02:00 |
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13952358b3
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Fixed a bug where some commands wouldn't work if the input DMS was not
in the current directory
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2019-07-25 11:59:19 +02:00 |
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9f38cd8cf6
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updated a comment
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2019-07-23 19:03:24 +02:00 |
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946f9723b8
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ecotag: fixed a bug where the wrong taxid for the best match was
retrieved
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2019-07-23 19:02:17 +02:00 |
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9752ff8494
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embl parser: information display about progress when parsing multiple
files
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2019-07-23 18:59:07 +02:00 |
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d99702f56f
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ngsfilter and alignpairedend: paired-end reads are now correctly
reversed and labeled to be aligned correctly by alignpairedend
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2019-07-23 18:56:51 +02:00 |
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1759302829
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C: ecotag: fixed 2 memory bugs
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2019-07-06 16:31:19 +02:00 |
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86bfa96fbe
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C: kmer similarity: small improvements
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2019-07-06 16:30:32 +02:00 |
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f765c6f41e
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obi alignpairedend: fixed a bug where first seq was kept in result view
instead of consensus seq
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2019-07-06 16:29:32 +02:00 |
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a83bf43ab9
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obi stats: result display is now sorted
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2019-07-06 16:27:51 +02:00 |
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3d9f0352ff
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obiclean parallelized
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2019-06-20 19:44:04 +02:00 |
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9b4c3537f9
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multithreaded obiclean working but not cleaned
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2019-06-19 17:29:58 +02:00 |
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fd0b7a9177
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j loop with critical (untested)
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2019-06-04 17:14:36 +02:00 |
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debf59b266
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i loop parallelized: bad
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2019-05-25 18:37:56 +02:00 |
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a04588da31
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openmp on j loop (i loop probably better)
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2019-05-24 16:51:04 +02:00 |
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ed5bb70c80
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CMake: setting compiler higher to avoid conflicts, and linking libopenmp
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2019-05-22 16:26:30 +02:00 |
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22a5ae72d1
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obi clean: not using tsearch library anymore, a simple byte array
instead. A lot more time and memory efficient. Closes #67
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2019-05-19 17:39:53 +02:00 |
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dc88181eeb
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Add a --cobitools3 options to setup.py
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2019-04-12 14:55:05 +02:00 |
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2f60e91d93
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Comment the install of the packages
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2019-04-12 13:03:53 +02:00 |
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7ba27b6a99
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Ask for python 3.7
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2019-04-01 09:08:27 +02:00 |
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d3937e1051
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Add the cmakefile to the manifest
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2019-04-01 09:01:45 +02:00 |
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35eeb07f08
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Build the C src in build/cobject
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2019-04-01 08:52:38 +02:00 |
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3afbbeb7e5
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CMake: made required version 3.10 for ubuntu
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2019-03-31 16:54:05 +02:00 |
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d6056a8e50
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dirty temporary fix for install
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2019-03-31 16:19:05 +02:00 |
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ac47bdce5d
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history: fixed DMS history when multiple inputs
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2019-03-31 15:44:20 +02:00 |
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7f8d1e7196
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C: obi lcs: cleaner progress print
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2019-03-31 15:42:58 +02:00 |
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80068a3c19
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ngsfilter: fixed parsing error
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2019-03-31 15:42:30 +02:00 |
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a3e6b7d913
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obi import: fixed import of View_NUC_SEQS to another DMS
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2019-03-31 15:42:07 +02:00 |
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416c2d7ba0
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Cython: made fasta formatter cleaner
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2019-03-31 15:41:32 +02:00 |
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26fb149efb
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C: made build_ref_db cleaner
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2019-03-31 15:40:13 +02:00 |
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2b8c066f8e
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Cython: added possibility to output in tabular format
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2019-03-31 15:39:38 +02:00 |
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e39c1a7fbf
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Cython: added tab formatter and parser (for obi export)
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2019-03-31 15:38:34 +02:00 |
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6841d879aa
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obi history: fixed a bug when displaying ascii history
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2019-03-31 10:51:52 +02:00 |
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f0ff585455
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Removing trace
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2019-03-30 20:52:54 +01:00 |
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601a2cfd7d
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obi uniq: various fixes...
|
2019-03-30 20:34:53 +01:00 |
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7c518300a0
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C: Views: fixed a bug when creating automatic columns with unformatted
comments
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2019-03-30 20:33:14 +01:00 |
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f16bbca8e2
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obi grep: fixed a bug where -p option didn't work
|
2019-03-30 19:10:42 +01:00 |
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173483448a
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Merge commit '3d842ff7'
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2019-03-30 15:29:52 +01:00 |
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