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e9a40630e9
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C: Columns: rounding column growth to ceil to avoid looping on small
values
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2020-04-13 19:02:10 +02:00 |
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8dbcd3025a
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C: Columns: reduced column growth factor from 2 to 1.3 to avoid errno28
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2020-04-13 14:47:56 +02:00 |
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4cf635d001
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Switch to version 3.0.0-beta13
v3.0.0-beta13
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2020-04-12 17:42:58 +02:00 |
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b7e7cc232a
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Made completion script cleaner
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2020-04-12 17:41:59 +02:00 |
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b6ab792ceb
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C: made error message more detailed when checking that sequences and
qualities match
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2020-04-12 17:40:24 +02:00 |
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ddea5a2964
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obi import: fixed inconsequential error when precomputing number of
entries in some formats
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2020-04-12 17:38:42 +02:00 |
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30852ab7d5
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View bash history: removed useless shebang
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2020-04-12 17:36:04 +02:00 |
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4d0299904e
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all commands (almost): cleaner DMS closing at the end
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2020-04-12 17:31:58 +02:00 |
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eef5156d95
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obi stats: fixed error when printing bool keys
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2020-04-12 17:12:04 +02:00 |
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e62c991bbc
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goes with previous commit
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2020-04-10 11:22:26 +02:00 |
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1218eed7fd
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ecopcr: now printing a warning instead of interrupting with an error
when a taxid is not found
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2020-04-10 11:22:04 +02:00 |
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cd9cea8c97
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obi import: fixed critical bug where the last entry of embl and genbank
files was not imported
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2020-04-09 19:26:27 +02:00 |
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98cfb70d73
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ecopcr: made some errors more informative
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2020-04-09 09:15:28 +02:00 |
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b9f68c76c8
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ecopcr: added warnings and check of primer length (related to #75)
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2020-04-05 18:40:56 +02:00 |
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0b98371688
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ngsfilter: added warning about primer length in -h (#75)
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2020-04-05 18:39:20 +02:00 |
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f0d152fcbd
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ngsfilter: now checking primer length (fixes #75)
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2020-04-05 18:29:10 +02:00 |
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8019dee68e
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ecotag: now closing all DMS properly
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2020-04-05 13:20:49 +02:00 |
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0b4a234671
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Swich to version 3.0.0-beta11
v3.0.0-beta11
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2020-02-12 14:23:42 +01:00 |
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d32cfdcce5
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ecotag: fixed the generated column comments formatting that would
generate errors
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2020-02-12 14:23:17 +01:00 |
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219c0d6fdc
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obi cat: Fixed the handling when concatenating views with dictionaries
having different key sets
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2020-02-12 14:21:39 +01:00 |
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dc9f897917
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switch to version 3.0.0-beta10
v3.0.0-beta10
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2020-02-02 21:15:27 +01:00 |
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bb72682f7d
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obi import: new option --preread to do a first readthrough of the
dataset if it contains huge dictionaries for a much faster import.
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2020-02-02 21:12:34 +01:00 |
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52920c3c71
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URI decoding: dirty temp fix for bug where default dms makes a mess when
should guess file
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2020-02-02 21:11:05 +01:00 |
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18c22cecf9
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switch to version 3.0.0-beta9
v3.0.0-beta9
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2020-02-01 15:48:55 +01:00 |
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1bfb96023c
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obi import: rewriting a column now deletes the old one to save disk
space
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2020-02-01 15:31:14 +01:00 |
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c67d668989
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obi import: fixed a bug when the first entry would contain a dictionary
with one key. Switch to beta8
v3.0.0-beta8
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2020-01-29 20:23:39 +01:00 |
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db0ac37d41
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switch to version 3.0.0-beta7
v3.0.0-beta7
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2020-01-29 16:18:53 +01:00 |
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d0c21ecd39
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Removed an OpenMP clause that was not obligatory and triggered a known
gcc bug involving macros
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2020-01-24 16:00:53 +01:00 |
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53212168a2
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History: added 'obi' in bash history for practical reasons
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2020-01-23 16:51:49 +01:00 |
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b4b2e62195
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Cleaner handling of reverse quality columns
v3.0.0-beta6
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2020-01-18 19:28:12 +01:00 |
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ced82c4242
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Switching to version 3.0-beta6
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2020-01-18 17:29:23 +01:00 |
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a524f8829e
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New command: obi cat to concatenate views (not optimized yet)
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2020-01-18 17:28:31 +01:00 |
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5c9091e9eb
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C: closing DMS after cleaning it instead of counting on upper layer
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2020-01-18 17:27:35 +01:00 |
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822000cb70
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Fixes in documentation
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2020-01-18 17:26:18 +01:00 |
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b9cd9bee9a
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C: Changed obibool definitions because of conflict with R
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2020-01-06 15:11:31 +01:00 |
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b1f3e082f9
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ngsfilter: fixed a bug when there is only one tag introduced in latest
edit
v3.0.0-beta5
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2020-01-06 13:53:38 +01:00 |
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6c018b403c
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ecopcr: fixed and improved the options to keep nuclotides around the
amplicon
v3.0.0-beta4
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2019-12-26 20:45:54 +01:00 |
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694d1934a8
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Tagging version beta3
3.0.0-beta3
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2019-12-12 17:03:13 +01:00 |
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fc3ac03630
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clean_dms: now works with extension
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2019-12-12 17:02:50 +01:00 |
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d75e54a078
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uniq: added forced deletion of reverse sequence quality
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2019-12-12 17:02:36 +01:00 |
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6bfd7441f3
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ngsfilter: fixed sequence cutting when dealing with unaligned sequences.
Could use optimization
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2019-12-12 17:01:31 +01:00 |
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81a179239c
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ngsfilter: fixed sequence cut bug on aligned sequences. Still exists for
unaligned sequences
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2019-12-10 18:13:27 +01:00 |
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35ce37c0f7
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ngsfilter: fixed a bug with unaligned chimeras (unpaired primers) and
made error annotations more explicit
v3.0.0-beta2
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2019-12-10 13:43:32 +01:00 |
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53f18316b0
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ngsfilter: made more robust and practical to use with empty tags
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2019-11-29 15:21:08 +01:00 |
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8bc249b2f4
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Version 3.0.0-beta1
v3.0.0-beta1
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2019-09-27 14:52:05 +02:00 |
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e308c2e822
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versioning 1.0.beta
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2019-09-26 21:05:05 +02:00 |
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3b3cf9359d
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CMake: unset gcc for nix
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2019-09-26 21:04:42 +02:00 |
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be85c55c9e
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Python: URIs: fixed bug on linux systems
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2019-09-25 14:41:52 +02:00 |
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6d5b904888
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Cleaning
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2019-09-25 11:58:00 +02:00 |
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50e8374f6f
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Added website URL in readme file
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2019-09-25 11:40:00 +02:00 |
|
