|
|
0951934f77
|
test
|
2015-09-25 11:28:23 +02:00 |
|
|
|
68b6ab3224
|
working on the cython wrapper. This doesn't compile
|
2015-09-24 11:32:09 +02:00 |
|
|
|
b0570ee486
|
fixed permissions when creating files
|
2015-09-22 15:52:07 +02:00 |
|
|
|
72105b2aed
|
fixed the computation of the data size when cloning a column
|
2015-09-22 10:27:17 +02:00 |
|
|
|
9ab8a42340
|
fixed the mkdir permission mode that forced the user to use sudo to
write in the created directories
|
2015-09-21 15:48:02 +02:00 |
|
|
|
7b606c0477
|
Column files now always have a size that is a multiple of the page size,
and the function that enlarges mapped column files tries mapping on next
byte before unmapping/mapping again
|
2015-09-21 15:42:29 +02:00 |
|
|
|
7d7dbb1bf9
|
Handling of single char columns
|
2015-09-18 15:49:15 +02:00 |
|
|
|
34a3717fb9
|
The cython function to open a column is now a method of the OBIDMS class
|
2015-09-17 11:23:50 +02:00 |
|
|
|
2698022aaf
|
New OBIDMS method to list the columns of an OBIDMS
|
2015-09-15 17:09:31 +02:00 |
|
|
|
90bf15186e
|
Method to get a column's number of lines used
|
2015-09-14 17:33:40 +02:00 |
|
|
|
5c3bc03bd2
|
Added the handling of errors with the functions to get a value in a
column
|
2015-09-14 17:04:29 +02:00 |
|
|
|
0e50fbf706
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2015-09-03 08:38:57 -04:00 |
|
|
|
f2231770f1
|
If an error occurs when cloning a column, the new cloned file is now
deleted
|
2015-09-02 13:06:21 +02:00 |
|
|
|
f5937ec019
|
Deplacement des sources de la doc...
|
2015-09-02 04:50:50 -04:00 |
|
|
|
52e3f2ce4a
|
Columns that are cloned are now closed after cloning
|
2015-09-02 10:36:00 +02:00 |
|
|
|
f0dffaff13
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2015-09-02 10:15:18 +02:00 |
|
|
|
f31d8983bb
|
Columns are now enlarged if needed when setting a value
|
2015-09-01 17:38:08 +02:00 |
|
|
|
a6395ebaf2
|
Transfert the distutil.ext from the org.asm project
|
2015-08-27 16:12:19 -04:00 |
|
|
|
3b7536c0df
|
The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
|
2015-08-26 17:25:15 +02:00 |
|
|
|
34ade161de
|
added an obidebug() line
|
2015-08-26 17:05:37 +02:00 |
|
|
|
48d10ea17c
|
Functions to truncate and/or close a column
|
2015-08-26 17:01:54 +02:00 |
|
|
|
fdc3b96beb
|
Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
|
2015-08-26 15:34:12 +02:00 |
|
|
|
95dbeb25a0
|
Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
|
2015-08-26 15:05:23 +02:00 |
|
|
|
9d91e907e5
|
When a column is created, its data is initialized to the NA value of the
obitype
|
2015-08-26 12:00:38 +02:00 |
|
|
|
3f81dc0173
|
Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
|
2015-08-26 10:52:19 +02:00 |
|
|
|
8ff3488926
|
Fix: The number of lines used is set when cloning a column with its data
|
2015-08-26 10:38:07 +02:00 |
|
|
|
611699252e
|
Files and functions for columns with the data type OBIChar_t, working
but using char* (needs to be changed)
|
2015-08-26 10:31:56 +02:00 |
|
|
|
9ad31fddff
|
Added the possibility to clone a column, with or without its data
|
2015-08-26 10:29:07 +02:00 |
|
|
|
e6d96d999a
|
Activated the html annotated files output in setup.py
|
2015-08-12 15:47:13 +02:00 |
|
|
|
eaca9c85f1
|
Files and functions for OBIDMS columns with the data type OBI_BOOL
|
2015-08-11 11:00:59 +02:00 |
|
|
|
bc2ca89088
|
Basis for OBIDMS columns with the type OBI_IDX
|
2015-08-10 16:30:55 +02:00 |
|
|
|
a5ed8f0ef0
|
A basic obicount for testing purposes
|
2015-08-10 16:06:05 +02:00 |
|
|
|
3b3267db9a
|
Removed a useless #include
|
2015-08-10 16:05:34 +02:00 |
|
|
|
d53c16cf3e
|
Functions and files for OBIDMS columns with the type OBI_FLOAT
|
2015-08-10 16:04:53 +02:00 |
|
|
|
66f397239b
|
Commented __del__ functions for now, as they contain closedir() that can
create problems
|
2015-08-03 16:15:26 +02:00 |
|
|
|
1fe2e36d5d
|
Fixed a critical bug where the elements names were not stored correctly
|
2015-08-03 16:11:55 +02:00 |
|
|
|
ab44e32afb
|
More efficient obi_column_set_int() and obi_column_get_int()
|
2015-08-03 15:26:28 +02:00 |
|
|
|
41f627091f
|
Error handling: obidebug() with message for all errors, and removed
commands closing directories when an error occurred (creating more
errors).
|
2015-08-03 15:10:39 +02:00 |
|
|
|
1e01c9059c
|
functions to get data type as a character string
|
2015-08-03 11:46:21 +02:00 |
|
|
|
5f62cd8526
|
C sources modified to add the handling of OBIDM columns with the type
OBI_INT, and the handling of multiple types in general
|
2015-07-31 18:03:48 +02:00 |
|
|
|
a6abc74500
|
Cython sources modified to add the handling of OBIDMS columns with the
type OBI_INT
|
2015-07-31 18:02:40 +02:00 |
|
|
|
5c674715ee
|
added the idea of each line of a column corresponding to a vector, with
the added informations of the number of elements per line and the
elements' names in the column's header structure
|
2015-07-20 16:08:50 +02:00 |
|
|
|
484fcca557
|
changed the private *at functions to the official ones for openat and
mkdirat, but not for opendirat, as there is no official version of it.
|
2015-07-20 11:38:43 +02:00 |
|
|
|
802f9983c2
|
fixing file names in list of C files after changing 'column groups' to
'column directories'
|
2015-07-20 11:13:56 +02:00 |
|
|
|
d26abc438d
|
fixing an 'error' I had introduced to test the debugging system
|
2015-07-20 11:12:48 +02:00 |
|
|
|
2162bf4272
|
obidebug.h for debugging tools
|
2015-06-26 17:56:15 +02:00 |
|
|
|
c454f9612e
|
changed 'column groups' to be called 'column directories' for now.
|
2015-06-26 17:53:03 +02:00 |
|
|
|
71cd59f775
|
close file descriptors that don't refer to a directory (as those can not
be reopened)
|
2015-06-24 13:53:12 +02:00 |
|
|
|
719ef61461
|
changed file names
|
2015-06-23 18:36:20 +02:00 |
|
|
|
152b34b5f4
|
Closes #10 : column groups stored in directories
|
2015-06-23 18:35:34 +02:00 |
|
