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1725b8b80c
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Reworked taxonomy Cython API to be a subclass of OBIWrapper
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2017-04-21 11:54:05 +02:00 |
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ab0d08293e
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Cython API: removed unnecessary imports
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2017-04-21 11:51:05 +02:00 |
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2f0c4b90d7
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Fixed a problem where a view would have a wrong line count after adding
a first column to it if there was already a Line selection associated
(happening when cloning), and fixed a bad error check.
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2017-04-14 16:25:55 +02:00 |
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537b9847da
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Minor C doc clarification
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2017-04-14 16:23:17 +02:00 |
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b998373be5
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Cython API: updated the test command for the new API and deactivated the
other commands for now
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2017-04-14 16:21:33 +02:00 |
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6f780148e2
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Cython API: added taxonomy API
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2017-04-14 16:20:30 +02:00 |
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0e08fc486a
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Cython API: fixed bug when deleting a column from a view where the
Cython wrapper wasn't closed, and fixed the Line selection
materialization
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2017-04-14 16:19:18 +02:00 |
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2bbee64e57
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Cython API: fixed problems with Column class
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2017-04-14 16:14:41 +02:00 |
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693859eec2
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Cython API: fixed conversion bugs when setting and getting values
(especially NA values) in OBI_CHAR, OBI_STR and OBI_SEQ columns
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2017-04-14 16:07:23 +02:00 |
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a3fad27190
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Cython API: automatic importing of column classes now works
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2017-04-06 15:45:02 +02:00 |
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f351540b0b
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Merge branch 'Eric_new_Python_API' of git@git.metabarcoding.org:obitools/obitools3.git into Eric_new_Python_API
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2017-04-06 15:39:52 +02:00 |
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6dccaa0213
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Patch the registering function : register_all_column_classes
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2017-04-06 15:37:51 +02:00 |
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5de9e0de51
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Cython API: now using const char* instead of char* for the type of
values read from OBI_STR columns
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2017-04-06 15:15:20 +02:00 |
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ad8de80353
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Views: better checks when adding an existing column to a view
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2017-04-06 14:44:07 +02:00 |
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8cd3e3604f
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Cython Column API
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2017-04-06 14:42:11 +02:00 |
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255f3c92ae
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Cython View API
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2017-04-06 14:41:58 +02:00 |
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08be4e231d
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Cython Object API
|
2017-04-06 14:41:43 +02:00 |
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b5b7995411
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new Cython DMS API
|
2017-04-06 14:41:26 +02:00 |
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0dfb1eb3e6
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Cython typed columns
|
2017-04-06 14:40:44 +02:00 |
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381194194c
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Cython API: compiling but not working
|
2017-03-06 16:07:02 +01:00 |
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778acc48cd
|
Added linked lists to handle lists of column pointers in views (not
tested)
|
2017-03-06 16:06:17 +01:00 |
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3319ede837
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Views: Column dictionaries now store and return pointers on column
pointers instead of column pointers.
|
2017-02-22 13:49:50 +01:00 |
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fc20b83ad1
|
Merging
|
2017-02-20 14:56:04 +01:00 |
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431c1c8c6a
|
Merge branch 'Eric_new_Python_API' of
git@git.metabarcoding.org:obitools/obitools3.git into
Eric_new_Python_API
Conflicts:
python/obitools3/obidms/_obidms.pxd
python/obitools3/obidms/_obidms.pyx
python/obitools3/obidms/_obidmscolumn_bool.pyx
python/obitools3/obidms/_obidmscolumn_str.pyx
python/obitools3/obidms/_obiseq.pxd
python/obitools3/obidms/_obiseq.pyx
python/obitools3/obidms/_obitaxo.pxd
python/obitools3/obidms/_obitaxo.pyx
python/obitools3/obidms/_obiview.pxd
python/obitools3/obidms/_obiview.pyx
python/obitools3/obidms/_obiview_nuc_seq.pxd
python/obitools3/obidms/_obiview_nuc_seq.pyx
python/obitools3/obidms/_obiview_nuc_seq_qual.pxd
python/obitools3/obidms/_obiview_nuc_seq_qual.pyx
python/obitools3/obidms/capi/obialign.pxd
python/obitools3/obidms/capi/obidmscolumn.pxd
python/obitools3/obidms/capi/obitaxonomy.pxd
python/obitools3/obidms/capi/obiview.pxd
|
2017-02-20 14:55:36 +01:00 |
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f23315e26f
|
New Cython API: compile but doesn't work
|
2017-02-17 15:14:06 +01:00 |
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071a3b61ab
|
Merged master fixed conflict.
|
2017-02-14 10:58:43 +01:00 |
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e524041013
|
Views: Files for unfinished views now have the extension
'.obiview_unfinished', renamed to '.obiview' when the view is finished.
|
2017-02-07 17:16:09 +01:00 |
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a9102620f5
|
Fixed missing email address
|
2017-02-07 17:14:10 +01:00 |
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7e9932f488
|
Fixed a C function declaration
|
2017-02-07 17:12:56 +01:00 |
|
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e50da64ea1
|
The elements names when a column contains several elements per line are
now formatted with '\0' as separator and handled in a more optimized way
|
2017-01-31 16:48:06 +01:00 |
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651c1d7845
|
utilities: bsearch and qsort with additional user_data pointer argument
|
2017-01-31 16:45:47 +01:00 |
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c0bcdce724
|
Taxonomy: documentation for all the functions, and fixed bugs when
closing the taxonomy (overwriting of .pdx files, missing freeing, and
re-placed a misplaced condition)
|
2017-01-18 18:22:49 +01:00 |
|
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c065c1914a
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Taxonomy: adding, writing and reading preferred names, changed some
function names, and fixed a bug with taxa indices not being properly
initialized
|
2017-01-16 17:28:20 +01:00 |
|
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0385a92e02
|
Taxonomy: Refactored the taxdump reading, and little fixes
|
2017-01-11 16:36:08 +01:00 |
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cf7f2de016
|
Modify __init__ and close method to deal with registration process
|
2017-01-10 14:26:16 +01:00 |
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5122ad52a7
|
Merge branch 'Eric_new_Python_API' of git@git.metabarcoding.org:obitools/obitools3.git into Eric_new_Python_API
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2017-01-10 14:07:50 +01:00 |
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4b02ba73ac
|
Add the OBIObject concept
|
2017-01-10 14:07:10 +01:00 |
|
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41ad3deec0
|
Taxonomy: informations about deleted taxids is now read from
delnodes.dmp file and added to *.adx file
|
2017-01-09 17:28:49 +01:00 |
|
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d68374018b
|
Taxonomy: functions to read the *.adx file (containing the deprecated
and current taxids and their corresponding indices in the taxa
structure) and to find the taxa using the merged index.
|
2017-01-06 15:52:21 +01:00 |
|
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f396625f98
|
Taxonomy: function to write *.adx files
|
2017-01-05 15:37:13 +01:00 |
|
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897032387f
|
Taxonomy: reading merged.dmp file in taxdump
|
2017-01-05 14:28:36 +01:00 |
|
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|
4a1d3167a7
|
Last change on my branch
|
2017-01-02 16:46:52 +01:00 |
|
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153c22257f
|
Last change on my branch
|
2017-01-02 16:46:17 +01:00 |
|
|
|
2139bfc748
|
refactoring...
|
2017-01-02 13:05:22 +01:00 |
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65f3b16e6d
|
Refactoring ...
|
2016-12-29 18:22:05 +01:00 |
|
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0526386337
|
first working DMS class
|
2016-12-27 06:17:45 +01:00 |
|
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62caf1346e
|
temporary remove some files
|
2016-12-26 15:03:24 +01:00 |
|
|
|
3ac6e85fb3
|
Big refactoring 4
|
2016-12-26 14:58:03 +01:00 |
|
|
|
5156f6bb9e
|
Big refactoring 3
|
2016-12-26 14:18:01 +01:00 |
|
|
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e6db2086d5
|
Big refactoring 2
|
2016-12-26 13:56:31 +01:00 |
|
