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f999946582
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obi uniq: fixed the remerging of already merged informations, and
efficiency improvements
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2020-05-07 17:05:54 +02:00 |
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773b36ec37
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obi import: fixed the import of old obitools files with premerged
informations, and other minor improvements
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2020-05-07 17:03:04 +02:00 |
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69cb434a6c
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version 3.0.0-beta15c
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2020-04-29 14:25:33 +02:00 |
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55d4f98d60
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obi annotate: fixed annotation at ranks
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2020-04-29 14:24:40 +02:00 |
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0bec2631e8
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ecotag: fixed a bug where all the full DMS path weren't properly sent to
the C layer
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2020-04-29 10:35:55 +02:00 |
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e6b6c6fa84
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AVLs: Made an error message more informative
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2020-04-29 10:14:04 +02:00 |
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974528b2e6
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build_ref_db: fixed bug erasing some of the higher LCAs (i.e. lowest
similarities)
v3.0.0-beta15
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2020-04-28 15:56:06 +02:00 |
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1b346b54f9
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ecotag: better specificity by now correctly looking for similarities
within refs above best score instead of ecotag threshold
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2020-04-28 15:10:07 +02:00 |
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058f2ad8b3
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ecopcr: fixed a bug where sequences were considered circular (generating
false positives)
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2020-04-27 14:44:35 +02:00 |
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60bfd3ae8d
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obi annotate: now defaults to setting str if expression is not valid
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2020-04-24 11:35:20 +02:00 |
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67bdee105a
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C: build_ref_db: added progress display for each step
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2020-04-18 14:24:08 +02:00 |
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0f745e0113
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C: Columns: optimizing column file growth
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2020-04-18 13:55:47 +02:00 |
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da8de52ba4
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export: fixed progress bar bug
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2020-04-17 15:09:10 +02:00 |
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4d36538c6e
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C: SSE lcs alignment: band-aid for memory bug I don't understand
(triggered on specific db on ubuntu)
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2020-04-17 15:07:52 +02:00 |
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8d0b17d87d
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Switch to version 3.0.0-beta14
v3.0.0-beta14
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2020-04-15 17:47:26 +02:00 |
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343999a627
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Taxonomy: fixed a critical memory bug when building the list of merged
taxids
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2020-04-15 17:46:13 +02:00 |
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e9a40630e9
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C: Columns: rounding column growth to ceil to avoid looping on small
values
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2020-04-13 19:02:10 +02:00 |
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8dbcd3025a
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C: Columns: reduced column growth factor from 2 to 1.3 to avoid errno28
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2020-04-13 14:47:56 +02:00 |
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4cf635d001
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Switch to version 3.0.0-beta13
v3.0.0-beta13
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2020-04-12 17:42:58 +02:00 |
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b7e7cc232a
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Made completion script cleaner
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2020-04-12 17:41:59 +02:00 |
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b6ab792ceb
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C: made error message more detailed when checking that sequences and
qualities match
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2020-04-12 17:40:24 +02:00 |
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ddea5a2964
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obi import: fixed inconsequential error when precomputing number of
entries in some formats
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2020-04-12 17:38:42 +02:00 |
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30852ab7d5
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View bash history: removed useless shebang
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2020-04-12 17:36:04 +02:00 |
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4d0299904e
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all commands (almost): cleaner DMS closing at the end
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2020-04-12 17:31:58 +02:00 |
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eef5156d95
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obi stats: fixed error when printing bool keys
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2020-04-12 17:12:04 +02:00 |
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e62c991bbc
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goes with previous commit
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2020-04-10 11:22:26 +02:00 |
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1218eed7fd
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ecopcr: now printing a warning instead of interrupting with an error
when a taxid is not found
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2020-04-10 11:22:04 +02:00 |
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cd9cea8c97
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obi import: fixed critical bug where the last entry of embl and genbank
files was not imported
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2020-04-09 19:26:27 +02:00 |
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98cfb70d73
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ecopcr: made some errors more informative
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2020-04-09 09:15:28 +02:00 |
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b9f68c76c8
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ecopcr: added warnings and check of primer length (related to #75)
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2020-04-05 18:40:56 +02:00 |
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0b98371688
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ngsfilter: added warning about primer length in -h (#75)
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2020-04-05 18:39:20 +02:00 |
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f0d152fcbd
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ngsfilter: now checking primer length (fixes #75)
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2020-04-05 18:29:10 +02:00 |
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8019dee68e
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ecotag: now closing all DMS properly
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2020-04-05 13:20:49 +02:00 |
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0b4a234671
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Swich to version 3.0.0-beta11
v3.0.0-beta11
|
2020-02-12 14:23:42 +01:00 |
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d32cfdcce5
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ecotag: fixed the generated column comments formatting that would
generate errors
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2020-02-12 14:23:17 +01:00 |
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219c0d6fdc
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obi cat: Fixed the handling when concatenating views with dictionaries
having different key sets
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2020-02-12 14:21:39 +01:00 |
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dc9f897917
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switch to version 3.0.0-beta10
v3.0.0-beta10
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2020-02-02 21:15:27 +01:00 |
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bb72682f7d
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obi import: new option --preread to do a first readthrough of the
dataset if it contains huge dictionaries for a much faster import.
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2020-02-02 21:12:34 +01:00 |
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52920c3c71
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URI decoding: dirty temp fix for bug where default dms makes a mess when
should guess file
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2020-02-02 21:11:05 +01:00 |
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18c22cecf9
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switch to version 3.0.0-beta9
v3.0.0-beta9
|
2020-02-01 15:48:55 +01:00 |
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1bfb96023c
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obi import: rewriting a column now deletes the old one to save disk
space
|
2020-02-01 15:31:14 +01:00 |
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c67d668989
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obi import: fixed a bug when the first entry would contain a dictionary
with one key. Switch to beta8
v3.0.0-beta8
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2020-01-29 20:23:39 +01:00 |
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db0ac37d41
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switch to version 3.0.0-beta7
v3.0.0-beta7
|
2020-01-29 16:18:53 +01:00 |
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d0c21ecd39
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Removed an OpenMP clause that was not obligatory and triggered a known
gcc bug involving macros
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2020-01-24 16:00:53 +01:00 |
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53212168a2
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History: added 'obi' in bash history for practical reasons
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2020-01-23 16:51:49 +01:00 |
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b4b2e62195
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Cleaner handling of reverse quality columns
v3.0.0-beta6
|
2020-01-18 19:28:12 +01:00 |
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ced82c4242
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Switching to version 3.0-beta6
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2020-01-18 17:29:23 +01:00 |
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a524f8829e
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New command: obi cat to concatenate views (not optimized yet)
|
2020-01-18 17:28:31 +01:00 |
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5c9091e9eb
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C: closing DMS after cleaning it instead of counting on upper layer
|
2020-01-18 17:27:35 +01:00 |
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822000cb70
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Fixes in documentation
|
2020-01-18 17:26:18 +01:00 |
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