Commit Graph

266 Commits

Author SHA1 Message Date
2d8c06f7b7 Fixed variable initialization for error detection 2016-04-26 14:38:46 +02:00
a6c8d35491 import command a bit modified for tests 2016-04-26 14:29:54 +02:00
366264828e Renamed MurmurHash2.c file to murmurhash2.c as it could be a problem 2016-04-26 14:29:17 +02:00
d3a6ff6043 Removed deprecated code 2016-04-26 14:27:16 +02:00
5ca84b91dc Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git 2016-04-25 18:35:57 +02:00
87935c6678 Fixed all compilation problems with new function names, locations etc 2016-04-25 18:35:02 +02:00
92980508c0 Made the function to clone a column in the context of a view private 2016-04-25 18:15:25 +02:00
65880db422 Made function to update the line count of a view private 2016-04-25 18:11:37 +02:00
767d9c7804 Reordered view functions for better coherence 2016-04-25 18:07:58 +02:00
2566377e2a Updated the documentation for utils functions 2016-04-25 18:02:58 +02:00
1fbbdd43f9 Updated obiversion_t declaration 2016-04-25 17:58:37 +02:00
8cdfbb379e Documentation for views and reworked the code a little 2016-04-25 17:58:12 +02:00
0a55e26520 Reworked obiview code and added more comments 2016-04-25 11:37:53 +02:00
68a8509c12 Updated documentation in obitypes.h 2016-04-25 10:33:01 +02:00
5f98d2ed5c Fixed the calculation of the size of data for OBI_STR and OBI_SEQ
columns
2016-04-25 10:26:51 +02:00
ef1be141c1 Update Licence to english version 2016-04-23 18:03:50 +02:00
bbfd40d56d Add license 2016-04-23 18:03:10 +02:00
5d08da46a2 Updated the documentation in obidmscolumn.h 2016-04-22 17:55:53 +02:00
66045acf1d Creating a column now uses the function to create the indexer name if
one was not provided
2016-04-22 17:47:00 +02:00
6977c4315c Improved function to build an indexer name 2016-04-22 17:38:23 +02:00
839b3000a8 Added a function to build indexer names 2016-04-22 17:08:23 +02:00
ffa4557928 changed MAP_PRIVATE flags to MAP_SHARED when opening a column because it
seems a lot more efficient
2016-04-22 16:26:24 +02:00
003cd11362 Fixed initialization of NA values for OBI_STR and OBI_SEQ columns 2016-04-22 16:14:23 +02:00
c87227b65a Uncommented an error message that doesn't need to be commented anymore 2016-04-22 16:11:56 +02:00
c07e75f2ac Updated the documentation for OBI_STR columns 2016-04-22 15:59:32 +02:00
6b394a5cf7 Updated the documentation for OBI_SEQ columns 2016-04-22 15:58:20 +02:00
2416b8ccd8 Deleted more unused inclusions in OBI_STR and OBI_SEQ column types code 2016-04-22 15:56:09 +02:00
b9921e111d Removed unused inclusions and definitions in all column types code 2016-04-22 15:50:19 +02:00
8f5aa8841d Removed unused definition in OBI_IDX columns code 2016-04-22 15:44:30 +02:00
900d67de87 Updated the documentation for columns with the type OBI_IDX 2016-04-22 15:43:39 +02:00
22e3c3eeed Updated the documentation for obidms functions 2016-04-22 11:28:09 +02:00
4ead37ee48 Finished moving obiblob functions to obiblob files and documentation for
obiblob functions
2016-04-21 15:18:14 +02:00
bce360bbd5 Documentation for obiblob indexer API 2016-04-21 15:08:40 +02:00
2a68cb26f8 Improved AVL tree documentation 2016-04-21 15:07:27 +02:00
043e70ff49 Updated AVL documentation 2016-04-21 14:39:03 +02:00
66021367f6 Moved some blob functions to obiblob.c 2016-04-21 14:20:26 +02:00
e69f44ae3d Little annotations for the murmur hash function. 2016-04-21 13:53:29 +02:00
1941a3785e Updated encode functions documentation 2016-04-21 13:46:02 +02:00
c7b8db6a2e Replaced malloc+memset with calloc 2016-04-21 13:45:39 +02:00
1dc4a3be49 Documentation for DNA sequence indexing functions 2016-04-21 13:36:51 +02:00
09597016fd Short doc for crc function 2016-04-21 13:23:52 +02:00
1a2fa0923c Documented the functions indexing and retrieving character strings 2016-04-21 11:35:21 +02:00
00f2f2cc51 Documented changes made in bloom functions 2016-04-21 11:22:31 +02:00
7a88ca619a First obi import (doesn't import tags yet because NA values aren't
handled)
2016-04-15 17:00:08 +02:00
eddd19a245 Changes in obi commands 2016-04-15 16:59:21 +02:00
2aafecc3b5 Changed sequence 'description' to 'definition' everywhere 2016-04-15 16:31:43 +02:00
094b2371e9 Deleted obsolete directory 2016-04-15 14:44:31 +02:00
c1034d300d merging and fixed git conflict with obiavl.h 2016-04-15 13:23:29 +02:00
02d67c257f The default name of an AVL is now the column name + '_indexer', and when
an AVL is opened (as opposed to created), it is read-only
2016-04-15 12:55:26 +02:00
e04ea85d1e Fixed problematic __str__ method and useless declarations in the
OBI_Nuc_Seq_Stored class
2016-04-15 11:22:05 +02:00