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e18b762d81
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Weird buggy Eclipse commit with nothing changed
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2018-10-21 17:35:18 +02:00 |
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da0e3d4043
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Cython: added full handling of NA strings when importing files
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2018-10-17 16:41:15 +02:00 |
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6a8670d24a
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Cython: minor fixes
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2018-10-17 11:26:13 +02:00 |
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303648bd47
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Cython: embl file parser
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2018-07-28 17:14:10 +02:00 |
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3e8c187f0b
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Cython API: added EMBL parser and files to import are now read in binary
mode
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2018-07-28 16:57:01 +02:00 |
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6825fc13ab
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Cython API: added ngsfilter file parser
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2018-03-21 16:41:25 +01:00 |
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49c17ab7b4
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Cython API: added tabular file parser
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2018-03-21 16:41:09 +01:00 |
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15e43bb9a1
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Cython API: obi import can now import ngsfilter files and tabular files
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2018-03-12 18:10:43 +01:00 |
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74d880b817
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Fixed default quality offset
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2018-02-12 14:43:44 +01:00 |
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d21f4a6f90
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Header parser: identifiers ending with ';' are now handled
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2017-11-24 17:59:52 +01:00 |
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74f15d1a23
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Cython API: Various fixes in input handlers (parsers, openers etc).
Mostly working but not bug-free
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2017-08-20 17:37:51 +02:00 |
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b9c65a871f
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Patch decoding of URL
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2017-07-28 12:41:28 +02:00 |
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89e2f80fd8
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Goes with previous commit
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2017-07-27 19:43:00 +02:00 |
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7112f44fb7
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Bug fixes for input handlers, openers, parsers etc. Compiling but not
tested
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2017-07-27 19:42:44 +02:00 |
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ec65f00cf2
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Complete the fasta iterator to manage new input options
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2017-07-27 16:05:30 +02:00 |
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8d9cdb4d03
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Complete the fastq iterator to manage new input options
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2017-07-27 16:05:17 +02:00 |
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8781ecab1f
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Add a factory checking the file format and returning the correct
iterator. First version working only with fasta and fastq nucleic
formats
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2017-07-27 16:02:52 +02:00 |
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b6b95f26b6
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obi import: Skipping sequences is now done through the iterators so that
sequences are not uselessly parsed
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2017-07-10 17:02:30 +02:00 |
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0526386337
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first working DMS class
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2016-12-27 06:17:45 +01:00 |
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8f0462c407
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Merge branch 'master' into Eric_version_for_sequence
Conflicts:
python/obitools3/obidms/_obidmscolumn_seq.pyx
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2016-08-03 10:09:20 +02:00 |
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a8ed57dc6e
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few small changes
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2016-05-21 12:29:55 +02:00 |
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5a78157112
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increase parsing speed of the header
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2016-05-21 10:29:11 +02:00 |
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0b9a41d952
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Patch a bug about the reading of the last sequence
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2016-05-21 10:28:03 +02:00 |
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45c9c5075c
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A first version of the fasta parser
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2016-04-01 18:15:54 +02:00 |
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20b97c972b
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Add boolean type in the tag evaluation
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2016-04-01 13:42:24 +02:00 |
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efc4a4a3c6
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Reduce the call count to eval. This reduce by 3 the time of fast(q|a)
header processing
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2016-04-01 08:54:06 +02:00 |
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1cd35b3359
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firt version of a fastq parser
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2016-03-31 10:47:12 +02:00 |
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