|
|
169b6514b4
|
small doc fixes
|
2021-03-29 13:07:48 +13:00 |
|
|
|
425fe25bd2
|
Made the OBITools3 more 'empty file friendly'
|
2021-03-15 16:25:41 +13:00 |
|
|
|
8aa455ad8a
|
Python: made all commands handle output to buffer object (e.g. stdout)
|
2020-07-24 16:09:48 +02:00 |
|
|
|
9672f01c6a
|
alignpairedend: improved/fixed the output tags for the alignment score
and lengths. Removed minimum score option
|
2020-07-13 15:59:50 +02:00 |
|
|
|
4d0299904e
|
all commands (almost): cleaner DMS closing at the end
|
2020-04-12 17:31:58 +02:00 |
|
|
|
b4b2e62195
|
Cleaner handling of reverse quality columns
|
2020-01-18 19:28:12 +01:00 |
|
|
|
ec0737a600
|
Added signal catching and handling in C and Cython
|
2019-09-21 16:47:22 +02:00 |
|
|
|
f0f7edf152
|
Python API: small option improvements
|
2019-09-21 12:08:36 +02:00 |
|
|
|
d99702f56f
|
ngsfilter and alignpairedend: paired-end reads are now correctly
reversed and labeled to be aligned correctly by alignpairedend
|
2019-07-23 18:56:51 +02:00 |
|
|
|
ee9947217c
|
alignpairedend: fixed the worst memory leak and the handling of the case
where 0 common kmers are found
|
2019-03-29 11:16:25 +01:00 |
|
|
|
478d19ab43
|
Cleaner stderr prints
|
2019-03-13 18:36:31 +01:00 |
|
|
|
e026e9ec83
|
Fixed the new alignpaired end to work after ngsfilter with the 9879847
possible cases
|
2019-02-17 18:32:35 +01:00 |
|
|
|
c7f5b8d980
|
Alignpairedend: added alignment using shifting with best kmer similarity
(low level layer in C and Cython API)
|
2019-01-21 17:30:46 +01:00 |
|
|
|
75a28929a7
|
Renamed Cython alignment library in an attempt to limit some compilation
bugs potentially involving name conflicts
|
2018-11-07 16:03:32 +01:00 |
|
|
|
e18b762d81
|
Weird buggy Eclipse commit with nothing changed
|
2018-10-21 17:35:18 +02:00 |
|
|
|
58589e04be
|
Cython: rearranged input and output format options to have both and
updated commands accordingly
|
2018-10-17 11:19:48 +02:00 |
|
|
|
e9a41c5b97
|
Commands: updated for JSON formatted comments with history
|
2018-10-07 19:10:34 +02:00 |
|
|
|
e8dc5eb123
|
Commands: ngsfilter and alignpairedend can now be used in whichever
order
|
2018-08-08 19:53:26 +02:00 |
|
|
|
9fb63d4894
|
Minor fixes
|
2018-03-16 19:05:09 +01:00 |
|
|
|
00993d4215
|
Cython API: fixed a bug where the quality format would not be read
properly from the configuration values
|
2018-02-12 14:42:30 +01:00 |
|
|
|
01ef85658c
|
New command: obi alignpairedend
|
2018-02-12 13:30:06 +01:00 |
|
