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55ada80500
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import: made ngsfilter file parsing more resilient and switching to
version 3.0.1b19
v3.0.1b19
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2022-07-15 16:02:21 +12:00 |
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ef9d9674b0
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obi import: added SINTAX format import and switch to version 3.0.1b18
v3.0.1b18
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2022-05-17 09:36:33 +12:00 |
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4f39bb2418
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switch to version 3.0.1b17
v3.0.1b17
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2022-05-03 10:55:36 +12:00 |
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0a2b8adb50
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import: added import of UNITE fasta format
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2022-05-03 10:54:41 +12:00 |
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f9b99a9397
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annotate: fixed a bug where a column type could be wrongly guessed and
switch to version 3.0.1b16
v3.0.1b16
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2022-03-30 16:32:07 +13:00 |
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ce2833c04b
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switch to version v3.0.1b15
v3.0.1b15
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2022-02-25 17:48:44 +13:00 |
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f64b3da30b
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split command
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2022-02-25 17:44:18 +13:00 |
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388b3e0410
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removed a trace
v3.0.1b14
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2021-11-11 15:53:27 +13:00 |
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c9db990b83
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switch to version 3.0.1b14
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2021-11-11 15:28:00 +13:00 |
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3f253feb5e
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Cython: View: fixed keys method to get list of view keys
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2021-11-11 15:27:32 +13:00 |
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85d2bab607
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small fix
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2021-11-11 15:26:48 +13:00 |
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53b3d81137
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small fixes and improvements
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2021-11-11 15:26:09 +13:00 |
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f6353fbf28
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obi export: added options to export to metabaR compatible format
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2021-11-11 15:24:12 +13:00 |
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5a8b9dca5d
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goes with previous commit
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2021-11-11 15:12:04 +13:00 |
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8bd6d6c8e9
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Python: URI decoding: now properly checking that paths can be encoded in
ASCII (issue #89)
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2021-11-02 11:17:59 +13:00 |
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405e6ef420
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Python: URI decoding: added metabaR output
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2021-11-02 11:16:29 +13:00 |
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fedacfafe7
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switch to version 3.0.1b13
v3.0.1b13
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2021-09-13 11:46:17 +12:00 |
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2d66e0e965
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python: genbank parser: better handling of white spaces
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2021-09-13 11:44:38 +12:00 |
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f43856b712
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switch to version 3.0.1b12
v3.0.1b12
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2021-09-08 10:56:55 +12:00 |
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9e0c319806
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Cython: fixed rewriting of column when rewriting a 1 element dict column
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2021-09-08 10:54:23 +12:00 |
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58b42cd977
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C: views: now correctly parses view names containing '.' when cleaning
unfinished views. Closes #115
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2021-09-08 10:52:42 +12:00 |
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34de90bce6
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ngsfilter: checks better if there is an associated sequencing quality
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2021-09-08 10:30:11 +12:00 |
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4be9f36f99
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stats: fixed the computation of variance when it is equal to 0
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2021-08-05 11:32:16 +12:00 |
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f10e78ba3c
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C: fixed the printing of view informations from a DMS (fixes #114)
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2021-08-05 11:31:24 +12:00 |
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88c8463ed7
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Cython: taxonomy: improved logging
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2021-08-05 11:29:20 +12:00 |
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89168271ef
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ecopcr: now accepting taxonomy from a different DMS than the reference
sequences
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2021-08-05 11:28:57 +12:00 |
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82d2642000
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Switch to version 3.0.1b11
v3.0.1b11
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2021-07-22 09:25:39 +12:00 |
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99c1cd60d6
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export: now exports header for tabular files by default and added option
to only export specific columns
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2021-07-22 09:23:18 +12:00 |
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ce7ae4ac55
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export: fixed 'only' option printing one too many if printing header
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2021-07-21 15:23:04 +12:00 |
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0b4283bb58
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cat: improved error handling
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2021-07-21 15:22:08 +12:00 |
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747f3efbb2
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Improved taxonomy reading information display
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2021-07-21 15:20:44 +12:00 |
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6c1a3aff47
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Fixed the handling of sample names that are numbers (forcing conversion)
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2021-07-21 15:19:24 +12:00 |
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e2932b05f2
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Implements #108 export integer missing values as 0 for tables by default
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2021-07-21 14:41:54 +12:00 |
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32345b9ec4
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Addresses #111
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2021-07-19 15:55:25 +12:00 |
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9334cf6cc6
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import: improved genbank parser and switch to version 3.0.1.b10
v3.0.1b10
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2021-06-17 08:42:01 +12:00 |
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8ec13a294c
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Switch to version 3.0.1b9
v3.0.1b9
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2021-06-01 09:21:43 +12:00 |
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3e45c34491
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import: now imports and adds taxids for SILVA and RDP files, added
import of lists, fixed skipping of errors (was not overwriting), and
fixed --no-progress-bar option
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2021-06-01 09:21:07 +12:00 |
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c2f3d90dc1
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build_ref_db: set default threshold to 0.99
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2021-06-01 09:11:17 +12:00 |
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6b732d11d3
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align: fixed column URI parsing
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2021-06-01 09:10:21 +12:00 |
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9eb833a0af
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typo fix
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2021-06-01 09:09:16 +12:00 |
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6b7b0e3bd1
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cat: fixed the handling of dictionary columns
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2021-06-01 09:06:13 +12:00 |
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47691a8f58
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count: added option to specify the count column
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2021-06-01 09:05:14 +12:00 |
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b908b581c8
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clean: hid not implemented option
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2021-06-01 09:04:22 +12:00 |
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03c174fd7a
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grep: added taxonomy check
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2021-05-31 17:03:39 +12:00 |
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2156588ff6
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added TODO comment
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2021-05-31 17:01:57 +12:00 |
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6ff29c6a6a
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Increased maximum line count to 10E12
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2021-05-31 17:00:55 +12:00 |
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51a3c68fb5
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C: build_reference_db: fixed gcc warning/error
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2021-05-31 16:59:17 +12:00 |
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da91ffc2c7
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URI decoding: fixed reading a taxonomy before any view
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2021-05-31 16:57:20 +12:00 |
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c884615522
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obi stats: various fixes and improvements
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2021-05-31 16:51:06 +12:00 |
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cb53381863
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ecotag: BEST_MATCH_TAXIDS now dereplicated (no repeated taxids in the
list) and switch to version 3.0.1b8
v3.0.1b8
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2021-05-10 16:02:06 +12:00 |
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