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81a179239c
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ngsfilter: fixed sequence cut bug on aligned sequences. Still exists for
unaligned sequences
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2019-12-10 18:13:27 +01:00 |
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35ce37c0f7
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ngsfilter: fixed a bug with unaligned chimeras (unpaired primers) and
made error annotations more explicit
v3.0.0-beta2
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2019-12-10 13:43:32 +01:00 |
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53f18316b0
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ngsfilter: made more robust and practical to use with empty tags
|
2019-11-29 15:21:08 +01:00 |
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8bc249b2f4
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Version 3.0.0-beta1
v3.0.0-beta1
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2019-09-27 14:52:05 +02:00 |
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e308c2e822
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versioning 1.0.beta
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2019-09-26 21:05:05 +02:00 |
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3b3cf9359d
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CMake: unset gcc for nix
|
2019-09-26 21:04:42 +02:00 |
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be85c55c9e
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Python: URIs: fixed bug on linux systems
|
2019-09-25 14:41:52 +02:00 |
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6d5b904888
|
Cleaning
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2019-09-25 11:58:00 +02:00 |
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50e8374f6f
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Added website URL in readme file
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2019-09-25 11:40:00 +02:00 |
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6282242a04
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C: Views: fixed a bug when trying to add a comment after changing the
file name of a finished view
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2019-09-25 11:39:32 +02:00 |
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44517db51f
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Fixed gcc warnings
|
2019-09-25 11:38:00 +02:00 |
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c3b9e46291
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more cleaning
|
2019-09-24 13:58:53 +02:00 |
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28b7fce59a
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Cython API: simpler column repr display
|
2019-09-22 20:23:31 +02:00 |
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fa9555deb9
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obi stats: fixed bug with None values
|
2019-09-22 20:21:53 +02:00 |
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d30f7e7317
|
more cleaning
|
2019-09-22 18:52:05 +02:00 |
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4fa38d9886
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cleaning
|
2019-09-22 17:38:28 +02:00 |
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71276537a6
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obi import: fixed bug when importing a taxdump
|
2019-09-22 16:45:30 +02:00 |
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ba9ba7aa60
|
obi grep: now able to convert str to bytes in predicate expressions
|
2019-09-22 16:44:45 +02:00 |
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7b4046c288
|
Bash completion script for commands, dms and views
|
2019-09-21 23:46:08 +02:00 |
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e2ba76002a
|
Cleaned setup script and put to my name ;)
|
2019-09-21 23:44:24 +02:00 |
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336100f716
|
obi less: now actually behaves like less
|
2019-09-21 18:29:12 +02:00 |
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d83398c0e0
|
Cython: View: lines from simple View instances are now displayed in tab
instead of dict format
|
2019-09-21 18:28:56 +02:00 |
|
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974d25b815
|
Cython: Fixed bug in tab formatter with header option always being set
to true
|
2019-09-21 18:27:47 +02:00 |
|
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ec0737a600
|
Added signal catching and handling in C and Cython
|
2019-09-21 16:47:22 +02:00 |
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06f9d6da60
|
obi import: importing a view to a DMS now uses the C API (more efficient
and imports all metadata)
|
2019-09-21 12:49:29 +02:00 |
|
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f0f7edf152
|
Python API: small option improvements
|
2019-09-21 12:08:36 +02:00 |
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9e72c8d16a
|
obi ls: improved taxonomy list
|
2019-09-20 20:46:33 +02:00 |
|
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|
7c3fa14789
|
obi import: fixed bug when reading output URI
|
2019-09-20 20:43:48 +02:00 |
|
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ec874c095b
|
new command: clean_dms to clean and unlock a DMS after a bad exit.
|
2019-09-20 20:38:25 +02:00 |
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|
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783a1343c4
|
DMS are now locked when used by a command. Added checks and changed
cleaning mechanisms.
|
2019-09-20 20:37:19 +02:00 |
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eb6c59dc1e
|
obi import: proper check for taxonomy name already existing in DMS when
importing a taxdump
|
2019-09-17 13:41:49 +02:00 |
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ad46056179
|
obi export: if export format is not specified, it is guessed from the
view type
|
2019-09-17 13:22:41 +02:00 |
|
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9063e9159d
|
Export options: output option is now only non-positional for obi export
|
2019-09-17 13:19:17 +02:00 |
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0159385943
|
URI decoding: fixed bug with dms-only URI
|
2019-09-17 12:50:37 +02:00 |
|
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a0c8deb806
|
obi export: made output to stdout and pipe in less possible
|
2019-09-17 12:31:03 +02:00 |
|
|
|
f566618be6
|
Added option for no progress bar and made output URI option non
positional (for stdout output)
|
2019-09-17 12:29:33 +02:00 |
|
|
|
88451116e8
|
URIs: added stdout output (empty URI)
|
2019-09-17 12:28:10 +02:00 |
|
|
|
eb913b2742
|
ecotag: trying to use a threshold lower than the ref db threshold now
returns an error instead of a warning
|
2019-09-15 19:27:47 +02:00 |
|
|
|
f8d1fa678a
|
obi stats: improved display with str instead of bytes
|
2019-09-10 16:20:36 +02:00 |
|
|
|
bc55c5ef8c
|
obi clean: fixed an openmp bug where the share size would be 0 blocking
the program
|
2019-09-10 15:37:33 +02:00 |
|
|
|
f3b0e10c7f
|
fixed a comment
|
2019-09-10 14:42:12 +02:00 |
|
|
|
8f9f2a2d10
|
obi ls: various improvements
|
2019-09-10 14:41:43 +02:00 |
|
|
|
045a751b0f
|
Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
|
2019-09-05 17:20:13 +02:00 |
|
|
|
ad3a72597f
|
Little fixes for linux compilation
|
2019-09-05 17:19:29 +02:00 |
|
|
|
8899478237
|
Update README.md
|
2019-09-04 17:29:45 +02:00 |
|
|
|
ec614e5d15
|
Update README.md
|
2019-09-04 17:23:30 +02:00 |
|
|
|
f8cccebe19
|
Update README.md
|
2019-09-04 17:11:46 +02:00 |
|
|
|
5e3c41b058
|
C: Fixed opened DIR leak
|
2019-09-04 16:48:13 +02:00 |
|
|
|
b3a1011d36
|
C: fixed a bug when opening or creating a new column directory where the
DMS was not saved in the struct
|
2019-09-04 13:16:28 +02:00 |
|
|
|
a7fabff1c7
|
C: made it so column DIR* are not kept open to handle very large DMS
|
2019-09-04 12:55:21 +02:00 |
|
