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9b066f4327
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Major update: obiarrays with columns containing indices referring to
character strings.
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2015-11-06 17:55:15 +01:00 |
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456551ffeb
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obi arrays that don't work because of cython bug passing wrong pointers
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2015-11-03 14:22:00 +01:00 |
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ecb9d97adb
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Reorganized the code to have less functions, and the functions to get
and format the creation date of a column are now working.
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2015-10-15 15:12:45 +02:00 |
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0eaa5aa784
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Major changes : new cython subclasses to handle columns with multiple
elements per line in a more efficient way + now elements_names are
passed as a list + new function to recover only the header of a column
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2015-10-14 18:05:34 +02:00 |
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21923e213d
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The unit tests now test for None values
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2015-10-12 18:02:40 +02:00 |
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6877fc4892
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Fixed a critical bug where values were initialized to NA at the wrong
location when there was multiple elements per line
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2015-10-12 17:54:36 +02:00 |
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dbed3d9d1d
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New module for unit testing with PyUnit
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2015-10-09 15:42:57 +02:00 |
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fc8bf16769
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Fixed a critical bug in the computation of the new number of lines of a
column when truncating
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2015-10-09 13:49:48 +02:00 |
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e114a3c9cb
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fixed a critical bug where data size was not calculated correctly and
column directory is now closed when column is closed
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2015-10-09 10:25:40 +02:00 |
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ebc9f6f512
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fixed a bug where Cython was casting doubles in floats
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2015-10-08 15:28:30 +02:00 |
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2b3f03ec28
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Removed deprecated script
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2015-10-08 10:46:46 +02:00 |
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8fd9c06be2
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Fixed missing file for documentation compilation
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2015-10-08 10:45:54 +02:00 |
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b553eef781
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Method to close a DMS is uncommented but not complete yet (columns have
to be closed separately)
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2015-10-08 10:44:13 +02:00 |
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ee4c513fd4
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Fixed a bug where cloning a column would fail if the data was empty
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2015-10-08 10:36:02 +02:00 |
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c013e6ad33
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fixed typo in doxygen doc
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2015-10-08 10:33:19 +02:00 |
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c98d567e2f
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Updated the documentation and restructured a bit because it wasn't
compiling (note: Breathe not working)
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2015-10-06 11:09:01 +02:00 |
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392f110c8d
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new functions in the OBIDMS_column class to raise NotImplementedError
exceptions and to get the creation date of a column
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2015-10-02 13:51:26 +02:00 |
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6ced3c4896
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new functions to get the creation date of a column
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2015-10-02 13:47:53 +02:00 |
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4b8bf41a71
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closes #13, obi_errno is initialized to 0
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2015-10-02 13:46:34 +02:00 |
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c59a244e9d
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Fixed little typo
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2015-09-30 12:07:13 +02:00 |
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4b7f2d268b
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Doxygen documentation corrected and completed.
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2015-09-30 12:03:46 +02:00 |
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45af8396b8
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minor change in variable name for better coherence
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2015-09-28 13:52:41 +02:00 |
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eeebbc77c3
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missing __init__ file in previous commit
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2015-09-28 13:52:13 +02:00 |
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72155c3b73
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entirely reworked cython wrapper
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2015-09-28 13:51:35 +02:00 |
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9aaf2d264a
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test
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2015-09-25 11:29:17 +02:00 |
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0951934f77
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test
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2015-09-25 11:28:23 +02:00 |
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68b6ab3224
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working on the cython wrapper. This doesn't compile
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2015-09-24 11:32:09 +02:00 |
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b0570ee486
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fixed permissions when creating files
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2015-09-22 15:52:07 +02:00 |
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72105b2aed
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fixed the computation of the data size when cloning a column
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2015-09-22 10:27:17 +02:00 |
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9ab8a42340
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fixed the mkdir permission mode that forced the user to use sudo to
write in the created directories
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2015-09-21 15:48:02 +02:00 |
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7b606c0477
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Column files now always have a size that is a multiple of the page size,
and the function that enlarges mapped column files tries mapping on next
byte before unmapping/mapping again
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2015-09-21 15:42:29 +02:00 |
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7d7dbb1bf9
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Handling of single char columns
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2015-09-18 15:49:15 +02:00 |
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34a3717fb9
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The cython function to open a column is now a method of the OBIDMS class
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2015-09-17 11:23:50 +02:00 |
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2698022aaf
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New OBIDMS method to list the columns of an OBIDMS
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2015-09-15 17:09:31 +02:00 |
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90bf15186e
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Method to get a column's number of lines used
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2015-09-14 17:33:40 +02:00 |
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5c3bc03bd2
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Added the handling of errors with the functions to get a value in a
column
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2015-09-14 17:04:29 +02:00 |
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0e50fbf706
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2015-09-03 08:38:57 -04:00 |
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f2231770f1
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If an error occurs when cloning a column, the new cloned file is now
deleted
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2015-09-02 13:06:21 +02:00 |
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f5937ec019
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Deplacement des sources de la doc...
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2015-09-02 04:50:50 -04:00 |
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52e3f2ce4a
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Columns that are cloned are now closed after cloning
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2015-09-02 10:36:00 +02:00 |
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f0dffaff13
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2015-09-02 10:15:18 +02:00 |
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f31d8983bb
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Columns are now enlarged if needed when setting a value
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2015-09-01 17:38:08 +02:00 |
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a6395ebaf2
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Transfert the distutil.ext from the org.asm project
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2015-08-27 16:12:19 -04:00 |
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3b7536c0df
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The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
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2015-08-26 17:25:15 +02:00 |
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34ade161de
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added an obidebug() line
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2015-08-26 17:05:37 +02:00 |
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48d10ea17c
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Functions to truncate and/or close a column
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2015-08-26 17:01:54 +02:00 |
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fdc3b96beb
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Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
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2015-08-26 15:34:12 +02:00 |
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95dbeb25a0
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Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
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2015-08-26 15:05:23 +02:00 |
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9d91e907e5
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When a column is created, its data is initialized to the NA value of the
obitype
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2015-08-26 12:00:38 +02:00 |
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3f81dc0173
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Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
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2015-08-26 10:52:19 +02:00 |
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