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c59a244e9d
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Fixed little typo
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2015-09-30 12:07:13 +02:00 |
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4b7f2d268b
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Doxygen documentation corrected and completed.
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2015-09-30 12:03:46 +02:00 |
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45af8396b8
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minor change in variable name for better coherence
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2015-09-28 13:52:41 +02:00 |
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eeebbc77c3
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missing __init__ file in previous commit
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2015-09-28 13:52:13 +02:00 |
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72155c3b73
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entirely reworked cython wrapper
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2015-09-28 13:51:35 +02:00 |
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9aaf2d264a
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test
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2015-09-25 11:29:17 +02:00 |
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0951934f77
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test
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2015-09-25 11:28:23 +02:00 |
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68b6ab3224
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working on the cython wrapper. This doesn't compile
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2015-09-24 11:32:09 +02:00 |
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b0570ee486
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fixed permissions when creating files
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2015-09-22 15:52:07 +02:00 |
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72105b2aed
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fixed the computation of the data size when cloning a column
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2015-09-22 10:27:17 +02:00 |
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9ab8a42340
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fixed the mkdir permission mode that forced the user to use sudo to
write in the created directories
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2015-09-21 15:48:02 +02:00 |
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7b606c0477
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Column files now always have a size that is a multiple of the page size,
and the function that enlarges mapped column files tries mapping on next
byte before unmapping/mapping again
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2015-09-21 15:42:29 +02:00 |
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7d7dbb1bf9
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Handling of single char columns
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2015-09-18 15:49:15 +02:00 |
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34a3717fb9
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The cython function to open a column is now a method of the OBIDMS class
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2015-09-17 11:23:50 +02:00 |
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2698022aaf
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New OBIDMS method to list the columns of an OBIDMS
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2015-09-15 17:09:31 +02:00 |
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90bf15186e
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Method to get a column's number of lines used
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2015-09-14 17:33:40 +02:00 |
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5c3bc03bd2
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Added the handling of errors with the functions to get a value in a
column
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2015-09-14 17:04:29 +02:00 |
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0e50fbf706
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2015-09-03 08:38:57 -04:00 |
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f2231770f1
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If an error occurs when cloning a column, the new cloned file is now
deleted
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2015-09-02 13:06:21 +02:00 |
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f5937ec019
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Deplacement des sources de la doc...
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2015-09-02 04:50:50 -04:00 |
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52e3f2ce4a
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Columns that are cloned are now closed after cloning
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2015-09-02 10:36:00 +02:00 |
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f0dffaff13
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Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git
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2015-09-02 10:15:18 +02:00 |
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f31d8983bb
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Columns are now enlarged if needed when setting a value
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2015-09-01 17:38:08 +02:00 |
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a6395ebaf2
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Transfert the distutil.ext from the org.asm project
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2015-08-27 16:12:19 -04:00 |
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3b7536c0df
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The number of lines used is updated in the header when a value is set,
and the iteration on the values of a column is done on the number of
lines used (instead of on the total line count).
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2015-08-26 17:25:15 +02:00 |
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34ade161de
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added an obidebug() line
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2015-08-26 17:05:37 +02:00 |
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48d10ea17c
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Functions to truncate and/or close a column
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2015-08-26 17:01:54 +02:00 |
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fdc3b96beb
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Added cython subclasses for columns with _writable or _read for each
data type. Trying to set a value on a _read subclass raises an
exception.
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2015-08-26 15:34:12 +02:00 |
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95dbeb25a0
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Added functions to get and set values in columns using the element name
(for columns with lines made of vectors of elements), for all data types
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2015-08-26 15:05:23 +02:00 |
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9d91e907e5
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When a column is created, its data is initialized to the NA value of the
obitype
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2015-08-26 12:00:38 +02:00 |
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3f81dc0173
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Changed the variable name 'nb_elements' to 'nb_lines' for better clarity
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2015-08-26 10:52:19 +02:00 |
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8ff3488926
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Fix: The number of lines used is set when cloning a column with its data
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2015-08-26 10:38:07 +02:00 |
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611699252e
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Files and functions for columns with the data type OBIChar_t, working
but using char* (needs to be changed)
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2015-08-26 10:31:56 +02:00 |
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9ad31fddff
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Added the possibility to clone a column, with or without its data
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2015-08-26 10:29:07 +02:00 |
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e6d96d999a
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Activated the html annotated files output in setup.py
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2015-08-12 15:47:13 +02:00 |
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eaca9c85f1
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Files and functions for OBIDMS columns with the data type OBI_BOOL
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2015-08-11 11:00:59 +02:00 |
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bc2ca89088
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Basis for OBIDMS columns with the type OBI_IDX
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2015-08-10 16:30:55 +02:00 |
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a5ed8f0ef0
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A basic obicount for testing purposes
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2015-08-10 16:06:05 +02:00 |
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3b3267db9a
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Removed a useless #include
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2015-08-10 16:05:34 +02:00 |
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d53c16cf3e
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Functions and files for OBIDMS columns with the type OBI_FLOAT
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2015-08-10 16:04:53 +02:00 |
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66f397239b
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Commented __del__ functions for now, as they contain closedir() that can
create problems
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2015-08-03 16:15:26 +02:00 |
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1fe2e36d5d
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Fixed a critical bug where the elements names were not stored correctly
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2015-08-03 16:11:55 +02:00 |
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ab44e32afb
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More efficient obi_column_set_int() and obi_column_get_int()
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2015-08-03 15:26:28 +02:00 |
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41f627091f
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Error handling: obidebug() with message for all errors, and removed
commands closing directories when an error occurred (creating more
errors).
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2015-08-03 15:10:39 +02:00 |
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1e01c9059c
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functions to get data type as a character string
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2015-08-03 11:46:21 +02:00 |
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5f62cd8526
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C sources modified to add the handling of OBIDM columns with the type
OBI_INT, and the handling of multiple types in general
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2015-07-31 18:03:48 +02:00 |
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a6abc74500
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Cython sources modified to add the handling of OBIDMS columns with the
type OBI_INT
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2015-07-31 18:02:40 +02:00 |
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5c674715ee
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added the idea of each line of a column corresponding to a vector, with
the added informations of the number of elements per line and the
elements' names in the column's header structure
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2015-07-20 16:08:50 +02:00 |
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484fcca557
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changed the private *at functions to the official ones for openat and
mkdirat, but not for opendirat, as there is no official version of it.
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2015-07-20 11:38:43 +02:00 |
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802f9983c2
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fixing file names in list of C files after changing 'column groups' to
'column directories'
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2015-07-20 11:13:56 +02:00 |
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