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6d445fe3ad | |||
824deb7e21 |
44
python/obitools3/commands/rm.pyx
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44
python/obitools3/commands/rm.pyx
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@ -0,0 +1,44 @@
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#cython: language_level=3
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from obitools3.uri.decode import open_uri
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from obitools3.apps.config import logger
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from obitools3.dms import DMS
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from obitools3.apps.optiongroups import addMinimalInputOption
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from obitools3.dms.view.view cimport View
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import os
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__title__="Delete a view"
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def addOptions(parser):
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addMinimalInputOption(parser)
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def run(config):
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DMS.obi_atexit()
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logger("info", "obi rm")
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# Open the input
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input = open_uri(config['obi']['inputURI'])
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if input is None:
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raise Exception("Could not read input")
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# Check that it's a view
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if isinstance(input[1], View) :
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view = input[1]
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else:
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raise NotImplementedError()
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# Get the path to the view file to remove
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path = input[0].full_path # dms path
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path+=b"/VIEWS/"
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path+=view.name
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path+=b".obiview"
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# Close the view and the DMS
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view.close()
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input[0].close(force=True)
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# Rm
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os.remove(path)
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@ -600,7 +600,8 @@ cdef class View(OBIWrapper) :
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if element is not None:
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if element.comments[b"input_dms_name"] is not None :
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for i in range(len(element.comments[b"input_dms_name"])) :
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if element.comments[b"input_dms_name"][i] == element.dms.name and b"/" not in element.comments[b"input_view_name"][i]: # Same DMS and not a special element like a taxonomy
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if b"/" not in element.comments[b"input_view_name"][i] and element.comments[b"input_view_name"][i] in element.dms \
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and element.comments[b"input_dms_name"][i] == element.dms.name : # Same DMS and not a special element like a taxonomy and view was not deleted
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top_level.append(element.dms[element.comments[b"input_view_name"][i]])
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else:
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top_level.append(None)
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@ -1,5 +1,5 @@
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major = 3
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minor = 0
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serial= '1b4'
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serial= '1b5'
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version ="%d.%d.%s" % (major,minor,serial)
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