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• v3.0.0b38 52a2e21b38

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  v3.0.0b38 Stable

  coissac released this 2020-11-06 15:39:39 +00:00 | 103 commits to master since this release

  grep: fixed --id-list option

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• v3.0.0b37 d27a5b9115

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  v3.0.0b37 Stable

  coissac released this 2020-10-30 09:50:03 +00:00 | 104 commits to master since this release

  import: can now import SILVA fasta files, and now handling sequences with Uracil (U) nucleotides (by converting them to Thymine (T) for now)

  addtaxids: new command to annotate sequences with their NCBI taxid based on their taxon name

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• v3.0.0b36 137c109f86

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  v3.0.0b36 Stable

  coissac released this 2020-09-29 15:53:42 +00:00 | 111 commits to master since this release

  obi ls: reworked a bit (mostly just now done in C instead of Cython)

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• v3.0.0b35 c4696ac865

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  v3.0.0b35 Stable

  coissac released this 2020-09-25 14:31:19 +00:00 | 114 commits to master since this release

  ecotag: added separate threshold for minimum circle identity (sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; the threshold for this circle is the highest value between the chosen minimum circle identity and the best assignment score found)

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• v3.0.0b34 11a0945a9b

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  v3.0.0b34 Stable

  coissac released this 2020-09-25 14:29:02 +00:00 | 115 commits to master since this release

  obi cat: fixed open file descriptor leak

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• v3.0.0b33 f23c40c905

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  v3.0.0b33 Stable

  coissac released this 2020-08-27 16:47:12 +00:00 | 116 commits to master since this release

  obi cat: fixed a bug introduced in 3.0.0b28 (KeyError: 'noprogressbar')

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• v3.0.0b32 f99fc13b75

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  v3.0.0b32 Stable

  coissac released this 2020-08-13 16:18:38 +00:00 | 117 commits to master since this release

  • export: now automatically sorts dictionary keys alphabetically for tab/csv output
  • various small bug fixes and improvements

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• v3.0.0b31 d33ff97846

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  v3.0.0b31 Stable

  coissac released this 2020-07-28 07:35:35 +00:00 | 122 commits to master since this release

  • export: fixed a bug introduced in version v3.0.0b28
  • ls: added more information about view creation date and OBITools3 version

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• v3.0.0b30 f2aa5fcf8b

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  v3.0.0b30 Stable

  coissac released this 2020-07-27 08:20:13 +00:00 | 126 commits to master since this release

  • alignpairedend: fixed division by 0 error introduced in version v3.0.0b28

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• v3.0.0b29 bccb3e6874

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  v3.0.0b29 Stable

  coissac released this 2020-07-26 15:42:58 +00:00 | 127 commits to master since this release

  • import: added --space-priority option to prioritize saving space over time when importing a view with a line selection associated

  • fixed and improved the associated column system

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