mercierc 0b4283bb58 cat: improved error handling

2021-07-21 15:22:08 +12:00

..

__init__.py

Weird buggy Eclipse commit with nothing changed

2018-10-21 17:35:18 +02:00

.gitignore

Cleaning first stage

2019-03-29 16:40:36 +01:00

addtaxids.pyx

typo fix

2021-06-01 09:09:16 +12:00

align.pxd

better cfiles

2019-02-19 14:11:29 +01:00

align.pyx

align: fixed column URI parsing

2021-06-01 09:10:21 +12:00

alignpairedend.pxd

Alignpairedend: added alignment using shifting with best kmer similarity

2019-01-21 17:30:46 +01:00

alignpairedend.pyx

small doc fixes

2021-03-29 13:07:48 +13:00

annotate.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

build_ref_db.pyx

build_ref_db: set default threshold to 0.99

2021-06-01 09:11:17 +12:00

cat.pyx

cat: improved error handling

2021-07-21 15:22:08 +12:00

clean_dms.pyx

clean_dms: now works with extension

2019-12-12 17:02:50 +01:00

clean.pyx

clean: hid not implemented option

2021-06-01 09:04:22 +12:00

count.pyx

count: added option to specify the count column

2021-06-01 09:05:14 +12:00

ecopcr.pyx

Python: made all commands handle output to buffer object (e.g. stdout)

2020-07-24 16:09:48 +02:00

ecotag.pyx

ecotag: clarified similarity circle documentation

2020-09-29 17:57:29 +02:00

export.pyx

export: now automatically sorts dictionary keys alphabetically for

2020-07-31 16:43:35 +02:00

grep.pyx

grep: added taxonomy check

2021-05-31 17:03:39 +12:00

head.pyx

small doc fixes

2021-03-29 13:07:48 +13:00

history.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

import.pyx

import: now imports and adds taxids for SILVA and RDP files, added

2021-06-01 09:21:07 +12:00

less.pyx

all commands (almost): cleaner DMS closing at the end

2020-04-12 17:31:58 +02:00

ls.pyx

obi ls: now done in C (preparing things for R packages to read DMS) and

2020-09-29 17:51:39 +02:00

ngsfilter.pyx

small fixes

2021-04-07 10:28:02 +12:00

rm.pyx

new command: obi rm: deletes any view (for now the user deleting a view

2021-03-18 09:17:06 +13:00

sort.pyx

small doc fixes

2021-03-29 13:07:48 +13:00

stats.pyx

Addresses #111

2021-07-19 15:55:25 +12:00

tail.pyx

small doc fixes

2021-03-29 13:07:48 +13:00

test.pyx

small doc fixes

2021-03-29 13:07:48 +13:00

uniq.pxd

obi uniq: fixed the remerging of already merged informations, and

2020-05-07 17:05:54 +02:00

uniq.pyx

uniq: now OK to use -m option even if only one unique key in information

2021-03-15 16:48:22 +13:00