obitools/obitools3
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c4696ac8655d06ca14e808726c2a2f4b0ed72251
obitools3/python/obitools3/commands
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Celine Mercier c4696ac865 ecotag: added separate threshold for minimum circle identity (and switch 
to version 3.0.0b35
2020-09-25 16:22:09 +02:00
..
__init__.py
Weird buggy Eclipse commit with nothing changed
2018-10-21 17:35:18 +02:00
.gitignore
Cleaning first stage
2019-03-29 16:40:36 +01:00
align.pxd
better cfiles
2019-02-19 14:11:29 +01:00
align.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
alignpairedend.pxd
Alignpairedend: added alignment using shifting with best kmer similarity
2019-01-21 17:30:46 +01:00
alignpairedend.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
annotate.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
build_ref_db.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
cat.pyx
obi cat: fixed open file descriptor leak and switch to version 3.0.0b34
2020-08-28 10:41:22 +02:00
clean_dms.pyx
clean_dms: now works with extension
2019-12-12 17:02:50 +01:00
clean.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
count.pyx
small help documentation improvement
2020-07-01 18:20:38 +02:00
ecopcr.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
ecotag.pyx
ecotag: added separate threshold for minimum circle identity (and switch
2020-09-25 16:22:09 +02:00
export.pyx
export: now automatically sorts dictionary keys alphabetically for
2020-07-31 16:43:35 +02:00
grep.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
head.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
history.pyx
all commands (almost): cleaner DMS closing at the end
2020-04-12 17:31:58 +02:00
import.pyx
obi import: added --space-priority option to import a view line by line
2020-07-26 17:36:52 +02:00
less.pyx
all commands (almost): cleaner DMS closing at the end
2020-04-12 17:31:58 +02:00
ls.pyx
ls: fixed an issue where big DMS couldn't be read by ls
2020-06-13 21:45:22 +02:00
ngsfilter.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
sort.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
stats.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
tail.pyx
Python: made all commands handle output to buffer object (e.g. stdout)
2020-07-24 16:09:48 +02:00
test.pyx
Python: added "date created" information in view representation
2020-07-27 17:38:45 +02:00
uniq.pxd
obi uniq: fixed the remerging of already merged informations, and
2020-05-07 17:05:54 +02:00
uniq.pyx
uniq: added a check to make sure that there is more than one element for
2020-07-30 16:14:37 +02:00