31 lines
776 B
Cython
Executable File
31 lines
776 B
Cython
Executable File
#cython: language_level=3
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from obitools3.apps.optiongroups import addMinimalInputOption
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from obitools3.uri.decode import open_uri
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from obitools3.dms import DMS
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from obitools3.dms.capi.obidms cimport obi_clean_dms
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from obitools3.apps.config import logger
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from obitools3.utils cimport tobytes
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__title__="Clean a DMS from unfinished views and columns"
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def addOptions(parser):
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addMinimalInputOption(parser)
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def run(config):
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DMS.obi_atexit()
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logger("info", "obi clean_dms")
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dms_path = tobytes(config['obi']['inputURI'])
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if b'.obidms' in dms_path:
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dms_path = dms_path.split(b'.obidms')[0]
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if obi_clean_dms(dms_path) < 0 :
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raise Exception("Error cleaning DMS", config['obi']['inputURI'])
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logger("info", "Done.")
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