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Update Updating and release notes

Celine Mercier
2022-05-05 06:57:02 +02:00
parent 1076c9eedf
commit 2c3004f500
1 changed files with 19 additions and 2 deletions
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Updating-and-release-notes.md

@ -24,69 +24,86 @@ python3 setup.py install
* `3.0.1b17`: * `3.0.1b17`:
- `import`: added import of UNITE fasta format - `import`: added import of UNITE fasta format
<br>
* `3.0.1b16`: * `3.0.1b16`:
- `annotate`: fixed a bug where a column type could be wrongly guessed - `annotate`: fixed a bug where a column type could be wrongly guessed
<br>
* `3.0.1b15`: * `3.0.1b15`:
- `split`: new command - `split`: new command
<br>
* `3.0.1b14`: * `3.0.1b14`:
- `export`: added options to export to metabaR compatible format - `export`: added options to export to metabaR compatible format
- Various minor fixes and improvements - Various minor fixes and improvements
<br>
* `3.0.1b13`: * `3.0.1b13`:
- `import`: more lenient handling of white spaces for genbank files - `import`: more lenient handling of white spaces for genbank files
<br>
* `3.0.1b12`: * `3.0.1b12`:
- `ecopcr`: now accepting taxonomy from a different DMS than the reference sequences - `ecopcr`: now accepting taxonomy from a different DMS than the reference sequences
- Various minor fixes and improvements - Various minor fixes and improvements
<br>
* `3.0.1b11`: * `3.0.1b11`:
- `export`: integer missing values now imported as '0' for tabular format ; header now printed by default for tabular format ; and added option to only export specific keys/columns - `export`: integer missing values now imported as '0' for tabular format ; header now printed by default for tabular format ; and added option to only export specific keys/columns
- Various minor fixes and improvements - Various minor fixes and improvements
<br>
* `3.0.1b10`: * `3.0.1b10`:
- `import`: fixed a parsing issue with some GenBank files - `import`: fixed a parsing issue with some GenBank files
<br>
* `3.0.1b9`: * `3.0.1b9`:
- `import`: now imports and adds NCBI taxids for SILVA and RDP training set fasta files - `import`: now imports and adds NCBI taxids for SILVA and RDP training set fasta files
- various minor fixes and improvements - various minor fixes and improvements
<br>
* `3.0.1b8`: * `3.0.1b8`:
- `ecotag`: 'BEST_MATCH_TAXIDS' now dereplicated (no repeated taxids in the - `ecotag`: 'BEST_MATCH_TAXIDS' now dereplicated (no repeated taxids in the
list) list)
<br>
* `3.0.1b7`: * `3.0.1b7`:
- `alignpairedend`: fixed bug that would cut out sequence ends when it should not have - `alignpairedend`: fixed bug that would cut out sequence ends when it should not have
<br>
* `3.0.1b6`: * `3.0.1b6`:
- Now handling large int values (`import` rewrites column in OBI_FLOAT if a value is > INT32_MAX) - Now handling large int values (`import` rewrites column in OBI_FLOAT if a value is > INT32_MAX)
- Fixed a bug where some taxids could not be retrieved - Fixed a bug where some taxids could not be retrieved
- `import`/`export`: fixed issue where the '\t' separator option was not read properly - `import`/`export`: fixed issue where the '\t' separator option was not read properly
- `stats`: improved the tabular display to be properly read by R - `stats`: improved the tabular display to be properly read by R
<br>
* `3.0.1b5`: * `3.0.1b5`:
- `obi rm`: new command to delete any view (for now the user deleting a view - `obi rm`: new command to delete any view (for now the user deleting a view
accepts that there will be missing information when running `obi history` accepts that there will be missing information when running `obi history`
if other views descend from the deleted view) if other views descend from the deleted view)
<br>
* `3.0.1b4`: * `3.0.1b4`:
- `ngsfilter`: fixed critical bug where barcodes shorter than the forward primer would be missed - `ngsfilter`: fixed critical bug where barcodes shorter than the forward primer would be missed
- `import`: fixed the import of tabular files with no header - `import`: fixed the import of tabular files with no header
<br>
* `3.0.1b3`: * `3.0.1b3`:
- `uniq`: now OK to use *-m* option even if only one unique key in information to merge (e.g. one sample) - `uniq`: now OK to use *-m* option even if only one unique key in information to merge (e.g. one sample)
<br>
* `3.0.1b2`: * `3.0.1b2`:
- Made the OBITools3 more 'empty file friendly' - Made the OBITools3 more 'empty file friendly'
<br>
* `3.0.1b1`: * `3.0.1b1`:
- The OBITools3 now work on the Windows Subsystem for Linux - The OBITools3 now work on the Windows Subsystem for Linux
<br>
* `3.0.0b43`: * `3.0.0b43`:
- Dictionaries with one key are now handled - Dictionaries with one key are now handled
<br>
* `3.0.0b42`: * `3.0.0b42`:
- `import`: improved Genbank file parser - `import`: improved Genbank file parser