obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Update Wolf tutorial with the OBITools3

Celine Mercier
2021-06-09 04:38:33 +02:00
parent 53ac1a1640
commit 55d051040a
1 changed files with 5 additions and 1 deletions
Download Patch File Download Diff File Expand all files Collapse all files

6
Wolf-tutorial-with-the-OBITools3.md

@ -126,7 +126,11 @@ For EMBL files, you can give the path to a directory with several EMBL files.
3. Download the taxonomy: 3. Download the taxonomy:
wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
Check the md5, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with:
md5sum taxdump.tar.gz
4. Import the taxonomy in the DMS: 4. Import the taxonomy in the DMS:
obi import --taxdump taxdump.tar.gz wolf/taxonomy/my_tax obi import --taxdump taxdump.tar.gz wolf/taxonomy/my_tax