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Update Wolf tutorial with the OBITools3

Celine Mercier
2021-04-28 00:49:31 +02:00
parent 8f74477828
commit 72303f4f2a
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Wolf-tutorial-with-the-OBITools3.md

@ -53,6 +53,10 @@ And unzip it:
obi alignpairedend -R wolf/reads2 wolf/reads1 - > aligned_reads.fastq obi alignpairedend -R wolf/reads2 wolf/reads1 - > aligned_reads.fastq
We can check the average alignment score (corresponding approximately to the similarity between the sequences in the overlap):
obi stats -a score_norm wolf/aligned_reads
### 3. Remove unaligned sequence records ### 3. Remove unaligned sequence records
obi grep -a mode:alignment wolf/aligned_reads wolf/good_sequences obi grep -a mode:alignment wolf/aligned_reads wolf/good_sequences