obitools/obitools3
2
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases 66 Wiki Activity

Update Wolf tutorial with the OBITools3

Celine Mercier
2021-04-28 00:52:07 +02:00
parent 72303f4f2a
commit 77604f635b
1 changed files with 3 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
Wolf-tutorial-with-the-OBITools3.md

@ -57,9 +57,9 @@ We can check the average alignment score (corresponding approximately to the sim
obi stats -a score_norm wolf/aligned_reads
### 3. Remove unaligned sequence records
### 3. Remove sequence records with a low overlap alignment score:
obi grep -a mode:alignment wolf/aligned_reads wolf/good_sequences
obi grep -p "sequence['score_norm'] > 0.8" wolf/aligned_reads wolf/good_sequences
### 4. Assign each sequence record to the corresponding sample/marker combination