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Update Wolf tutorial with the OBITools3

Celine Mercier
2021-06-09 04:46:58 +02:00
parent 55d051040a
commit bfd16d2d8e
1 changed files with 3 additions and 3 deletions
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Wolf-tutorial-with-the-OBITools3.md

@ -119,15 +119,15 @@ Otherwise, to build the database yourself from the start:
obi import --embl EMBL wolf/embl_refs obi import --embl EMBL wolf/embl_refs
For EMBL files, you can give the path to a directory with several EMBL files. For EMBL files, you can give the path to a directory with several EMBL files.
**Note:** The reference database can be built in another DMS. **Note:** The reference database can be built in another DMS.
3. Download the taxonomy: 3. Download the taxonomy:
wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz wget https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz
Check the md5, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with: Check the md5 sum, as files downloaded from the NCBI are often corrupted on some networks. Compare https://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz.md5 with:
md5sum taxdump.tar.gz md5sum taxdump.tar.gz