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Update Updating and release notes

Celine Mercier
2020-08-27 18:52:43 +02:00
parent 7c80e5f28d
commit edb392e0d3
1 changed files with 17 additions and 18 deletions
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Updating-and-release-notes.md

@ -2,6 +2,23 @@
You can check the version installed by running `obi --version` You can check the version installed by running `obi --version`
### How to update with pip:
From the OBITools3 virtual environment, run:
```
pip3 install --pre --upgrade OBITools3
```
### How to update with git:
From the OBITools3 installation directory and virtual environment, run:
```
git pull
python3 setup.py install
```
### Release notes: ### Release notes:
* `3.0.0b33`: * `3.0.0b33`:
@ -91,21 +108,3 @@ dataset if it contains huge dictionaries for a much faster import.
* `3.0.0-beta4`: Fixed and improved the options to keep nucleotides around the amplicon in *ecopcr*. * `3.0.0-beta4`: Fixed and improved the options to keep nucleotides around the amplicon in *ecopcr*.
* `3.0.0-beta3`: Fixed bugs in *ngsfilter* when cutting sequences, and a few minor bugs. * `3.0.0-beta3`: Fixed bugs in *ngsfilter* when cutting sequences, and a few minor bugs.
### How to update with pip:
From the OBITools3 virtual environment, run:
```
pip3 install --pre --upgrade OBITools3
```
### How to update with git:
From the OBITools3 installation directory and virtual environment, run:
```
git pull
python3 setup.py install
```