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51d11aa36d176574a576808ea21be0379f7d82e4
obitools4/go.mod

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Change path of the obitools pkg Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
2023-11-29 12:14:37 +01:00
module git.metabarcoding.org/obitools/obitools4/obitools4
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
switch to go version 1.23.1
2024-09-24 15:55:01 +02:00
go 1.23.1
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
require (
Patch rev complement and first implementation of --auto in obicsv Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
github.com/DavidGamba/go-getoptions v0.28.0
adds a rule to update packages and push the corresponding updates module files Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
2023-03-21 22:02:18 +07:00
github.com/PaesslerAG/gval v1.2.2
Adds some new dependencies Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
2023-03-07 11:12:39 +07:00
github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df
Every small changes to include into Release 4.0.4 Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
2023-08-27 17:22:51 +02:00
github.com/chen3feng/stl4go v0.1.1
Patch a bug in fastq reader
2024-10-20 16:07:43 +02:00
github.com/dlclark/regexp2 v1.11.4
Switch to faster json library go-json and sonic Former-commit-id: ab9b4723f1dcf79fe5c073fff4d86f4f6969edfd
2024-06-23 00:36:08 +02:00
github.com/goccy/go-json v0.10.3
Every small changes to include into Release 4.0.4 Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
2023-08-27 17:22:51 +02:00
github.com/klauspost/pgzip v1.2.6
Add automatic rules to manage version number Former-commit-id: f4fcc1927f4169025c1d8cc88c5f3abcdc76037c
2024-06-01 17:26:16 +02:00
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
Adds some new dependencies Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
2023-03-07 11:12:39 +07:00
github.com/rrethy/ahocorasick v1.0.0
adds a rule to update packages and push the corresponding updates module files Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
2023-03-21 22:02:18 +07:00
github.com/schollz/progressbar/v3 v3.13.1
Every small changes to include into Release 4.0.4 Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
2023-08-27 17:22:51 +02:00
github.com/sirupsen/logrus v1.9.3
A lot of changes and debug... A complete first version of the recipy in the Cookbook about avaluating primers Former-commit-id: 6c816f5546b3f472f6930d112abe3da04d2d5a55
2024-05-26 12:56:29 +02:00
github.com/stretchr/testify v1.8.4
adds a rule to update packages and push the corresponding updates module files Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
2023-03-21 22:02:18 +07:00
github.com/tevino/abool/v2 v2.1.0
Bug in the json parsing Former-commit-id: e652b04b9fa7e11124eb5930c7bec4613c808758
2024-03-19 13:50:13 +01:00
github.com/yuin/gopher-lua v1.1.1
Patch rev complement and first implementation of --auto in obicsv Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
golang.org/x/exp v0.0.0-20231006140011-7918f672742d
Every small changes to include into Release 4.0.4 Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
2023-08-27 17:22:51 +02:00
gonum.org/v1/gonum v0.14.0
update modules Former-commit-id: 04651744d21f0db3406a0aa7bb9cdf9729140349
2024-02-16 18:12:59 +01:00
gopkg.in/yaml.v3 v3.0.1
Adds some new dependencies Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
2023-03-07 11:12:39 +07:00
scientificgo.org/special v0.0.0
Change the memory management for thee BuildAlignment function
2022-01-15 19:10:16 +01:00
)
A go implementation of the fasta reader Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
2023-09-01 09:30:12 +02:00
require (
a functional new version of obifind
2024-11-24 19:33:24 +01:00
github.com/Clever/csvlint v0.3.0 // indirect
Patch a bug on compressed output
2025-02-05 14:18:24 +01:00
github.com/TuftsBCB/io v0.0.0-20140121014543-22b94e9b23f9 // indirect
Changes to be committed: modified: cmd/obitools/obitag/main.go modified: cmd/obitools/obitag2/main.go modified: go.mod modified: go.sum modified: pkg/obiformats/ncbitaxdump/read.go modified: pkg/obioptions/version.go modified: pkg/obiseq/attributes.go modified: pkg/obiseq/taxonomy_lca.go modified: pkg/obiseq/taxonomy_methods.go modified: pkg/obiseq/taxonomy_predicate.go modified: pkg/obitax/inner.go modified: pkg/obitax/lca.go new file: pkg/obitax/taxid.go modified: pkg/obitax/taxon.go modified: pkg/obitax/taxonomy.go modified: pkg/obitax/taxonslice.go modified: pkg/obitools/obicleandb/obicleandb.go modified: pkg/obitools/obigrep/options.go modified: pkg/obitools/obilandmark/obilandmark.go modified: pkg/obitools/obilandmark/options.go modified: pkg/obitools/obirefidx/famlilyindexing.go modified: pkg/obitools/obirefidx/geomindexing.go modified: pkg/obitools/obirefidx/obirefidx.go modified: pkg/obitools/obirefidx/options.go modified: pkg/obitools/obitag/obigeomtag.go modified: pkg/obitools/obitag/obitag.go modified: pkg/obitools/obitag/options.go modified: pkg/obiutils/strings.go
2024-12-19 13:36:59 +01:00
github.com/buger/jsonparser v1.1.1 // indirect
Changes to be committed: modified: go.mod modified: go.sum modified: pkg/obilua/obilib.go modified: pkg/obilua/obiseq.go modified: pkg/obilua/obiseqslice.go new file: pkg/obilua/obitaxon.go new file: pkg/obilua/obitaxonomy.go modified: pkg/obioptions/version.go
2025-02-02 16:52:52 +01:00
github.com/chzyer/readline v0.0.0-20180603132655-2972be24d48e // indirect
Adds some unit test Former-commit-id: b1a59df1c87187a1538f30c447d42bbe96402419
2023-11-08 11:13:56 +02:00
github.com/davecgh/go-spew v1.1.1 // indirect
A lot of changes and debug... A complete first version of the recipy in the Cookbook about avaluating primers Former-commit-id: 6c816f5546b3f472f6930d112abe3da04d2d5a55
2024-05-26 12:56:29 +02:00
github.com/goombaio/orderedmap v0.0.0-20180924084748-ba921b7e2419 // indirect
first preliminary version of obiscript. Former-commit-id: 0d2c0fc5e33e0873ba5c04aca4cf7dd69aa83c90
2024-03-06 12:56:44 -03:00
github.com/kr/pretty v0.3.0 // indirect
github.com/kr/text v0.2.0 // indirect
Adds some unit test Former-commit-id: b1a59df1c87187a1538f30c447d42bbe96402419
2023-11-08 11:13:56 +02:00
github.com/pmezard/go-difflib v1.0.0 // indirect
Bug in the json parsing Former-commit-id: e652b04b9fa7e11124eb5930c7bec4613c808758
2024-03-19 13:50:13 +01:00
github.com/rogpeppe/go-internal v1.6.1 // indirect
A go implementation of the fasta reader Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
2023-09-01 09:30:12 +02:00
)
Change the memory management for thee BuildAlignment function
2022-01-15 19:10:16 +01:00
require (
A go implementation of the fasta reader Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
2023-09-01 09:30:12 +02:00
github.com/dsnet/compress v0.0.1
Patch rev complement and first implementation of --auto in obicsv Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
github.com/gabriel-vasile/mimetype v1.4.3
A lot of changes and debug... A complete first version of the recipy in the Cookbook about avaluating primers Former-commit-id: 6c816f5546b3f472f6930d112abe3da04d2d5a55
2024-05-26 12:56:29 +02:00
github.com/goombaio/orderedset v0.0.0-20180925151225-8e67b20a9b77
Patch a bug in Subsequence and adds few unit tests. Former-commit-id: caddc9ad6523e4ef02899bfe83cc8681ef674383
2023-11-08 10:16:34 +02:00
github.com/klauspost/compress v1.17.2
Every small changes to include into Release 4.0.4 Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
2023-08-27 17:22:51 +02:00
github.com/mattn/go-runewidth v0.0.15 // indirect
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db // indirect
adds a rule to update packages and push the corresponding updates module files Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
2023-03-21 22:02:18 +07:00
github.com/rivo/uniseg v0.4.4 // indirect
github.com/shopspring/decimal v1.3.1 // indirect
A go implementation of the fasta reader Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
2023-09-01 09:30:12 +02:00
github.com/ulikunitz/xz v0.5.11
Patch rev complement and first implementation of --auto in obicsv Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
golang.org/x/net v0.17.0 // indirect
first preliminary version of obiscript. Former-commit-id: 0d2c0fc5e33e0873ba5c04aca4cf7dd69aa83c90
2024-03-06 12:56:44 -03:00
golang.org/x/sys v0.17.0 // indirect
Patch rev complement and first implementation of --auto in obicsv Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
2023-11-07 09:37:07 +02:00
golang.org/x/term v0.13.0 // indirect
A go implementation of the fasta reader Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
2023-09-01 09:30:12 +02:00
gopkg.in/check.v1 v1.0.0-20201130134442-10cb98267c6c
Patch module name from oa2 to obitools
2022-01-13 23:43:01 +01:00
)
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