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Adds some new dependencies

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Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
This commit is contained in:
Eric Coissac
2023-03-07 11:12:39 +07:00
parent d88de15cdc
commit d4b185b716
3 changed files with 20 additions and 40 deletions
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14
.gitignore vendored
View File

@ -41,8 +41,7 @@ Stat_error.Rmd
/Estimate_proba_true_seq.Rmd
/modele_error_euka.qmd
/obitools.code-workspace
doc/.DS_Store
.DS_Store/
.DS_Store
.RData
x
xxx
@ -62,3 +61,14 @@ euka03.csv*
gbbct793.seq.gz
gbinv1003.seq.gz
gbpln210.seq
/doc/book/OBITools-V4.aux
/doc/book/OBITools-V4.fdb_latexmk
/doc/book/OBITools-V4.fls
/doc/book/OBITools-V4.log
/doc/book/OBITools-V4.pdf
/doc/book/OBITools-V4.synctex.gz
/doc/book/OBITools-V4.tex
/doc/book/OBITools-V4.toc
getoptions.adoc
Archive.zip
.DS_Store

22
go.mod
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@ -3,37 +3,27 @@ module git.metabarcoding.org/lecasofts/go/obitools
go 1.18
require (
cloudeng.io/algo v0.0.0-20220721000539-f9fe69fddaf6
github.com/DavidGamba/go-getoptions v0.25.3
github.com/PaesslerAG/gval v1.1.2
github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df
github.com/goccy/go-json v0.9.4
github.com/klauspost/pgzip v1.2.5
github.com/rrethy/ahocorasick v1.0.0
github.com/schollz/progressbar/v3 v3.8.6
github.com/sirupsen/logrus v1.8.1
github.com/tevino/abool/v2 v2.0.1
gonum.org/v1/gonum v0.11.0
scientificgo.org/special v0.0.0
)
require (
cloudeng.io/algo v0.0.0-20220721000539-f9fe69fddaf6 // indirect
github.com/KyleBanks/depth v1.2.1 // indirect
github.com/akualab/gjoa v0.0.0-20150423185904-0953495dbcc7 // indirect
github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df // indirect
github.com/cloudengio/go.pkgs v0.0.0-20220721000539-f9fe69fddaf6 // indirect
github.com/golang/glog v1.0.0 // indirect
github.com/klauspost/compress v1.15.9 // indirect
github.com/klauspost/pgzip v1.2.5 // indirect
github.com/mattn/go-runewidth v0.0.13 // indirect
github.com/mitchellh/colorstring v0.0.0-20190213212951-d06e56a500db // indirect
github.com/rivo/uniseg v0.2.0 // indirect
github.com/rrethy/ahocorasick v1.0.0 // indirect
github.com/spf13/pflag v1.0.5 // indirect
github.com/vc60er/deptree v0.0.0-20220713110736-c48b0387dddc // indirect
github.com/yuin/goldmark v1.4.13 // indirect
golang.org/x/crypto v0.0.0-20220131195533-30dcbda58838 // indirect
golang.org/x/exp v0.0.0-20191002040644-a1355ae1e2c3 // indirect
golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4 // indirect
golang.org/x/net v0.0.0-20220722155237-a158d28d115b // indirect
golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f // indirect
golang.org/x/term v0.0.0-20210927222741-03fcf44c2211 // indirect
golang.org/x/tools v0.1.12 // indirect
gonum.org/v1/gonum v0.11.0 // indirect
scientificgo.org/special v0.0.0 // indirect
)

24
go.sum
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@ -1,29 +1,22 @@
cloudeng.io/algo v0.0.0-20220721000539-f9fe69fddaf6 h1:9vMtasELP9mg/w0tI4gkfdTkc5hDf8fP1CT9w4L/RN4=
cloudeng.io/algo v0.0.0-20220721000539-f9fe69fddaf6/go.mod h1:dgJhQ6JXLysnBQG09/5Q56rwJfgyKXlnDbKzko9MhdA=
cloudeng.io/errors v0.0.7 h1:GqFEwQrkOhoaF3Nla8tDzHhFwzYYHWmRmGkf4Ag2zGM=
dmitri.shuralyov.com/gpu/mtl v0.0.0-20190408044501-666a987793e9/go.mod h1:H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU=
github.com/BurntSushi/xgb v0.0.0-20160522181843-27f122750802/go.mod h1:IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=
github.com/DavidGamba/go-getoptions v0.25.3 h1:lSPcMkwWvVZU05C+Uz4DKnKN5wz4bcD1QvJ/QHCRexo=
github.com/DavidGamba/go-getoptions v0.25.3/go.mod h1:qLaLSYeQ8sUVOfKuu5JT5qKKS3OCwyhkYSJnoG+ggmo=
github.com/KyleBanks/depth v1.2.1 h1:5h8fQADFrWtarTdtDudMmGsC7GPbOAu6RVB3ffsVFHc=
github.com/KyleBanks/depth v1.2.1/go.mod h1:jzSb9d0L43HxTQfT+oSA1EEp2q+ne2uh6XgeJcm8brE=
github.com/PaesslerAG/gval v1.1.2 h1:EROKxV4/fAKWb0Qoj7NOxmHZA7gcpjOV9XgiRZMRCUU=
github.com/PaesslerAG/gval v1.1.2/go.mod h1:Fa8gfkCmUsELXgayr8sfL/sw+VzCVoa03dcOcR/if2w=
github.com/PaesslerAG/jsonpath v0.1.0 h1:gADYeifvlqK3R3i2cR5B4DGgxLXIPb3TRTH1mGi0jPI=
github.com/PaesslerAG/jsonpath v0.1.0/go.mod h1:4BzmtoM/PI8fPO4aQGIusjGxGir2BzcV0grWtFzq1Y8=
github.com/akualab/gjoa v0.0.0-20150423185904-0953495dbcc7 h1:v8r5rCWpphm5f+yaKDQvVKM46jj0SB7iDUTVS1MHSAg=
github.com/akualab/gjoa v0.0.0-20150423185904-0953495dbcc7/go.mod h1:zhxCkmvf40lxgYc6aJuF6AOwfzuvFIANF9OQaMz5xNs=
github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df h1:GSoSVRLoBaFpOOds6QyY1L8AX7uoY+Ln3BHc22W40X0=
github.com/barkimedes/go-deepcopy v0.0.0-20220514131651-17c30cfc62df/go.mod h1:hiVxq5OP2bUGBRNS3Z/bt/reCLFNbdcST6gISi1fiOM=
github.com/cloudengio/go.pkgs v0.0.0-20220721000539-f9fe69fddaf6 h1:jvr4JzC9aLREkLwJJKbPSMGm3ls2nA3DaF45ELgQaRI=
github.com/cloudengio/go.pkgs v0.0.0-20220721000539-f9fe69fddaf6/go.mod h1:F06qYndTL3ObF2Tc5nv+eduTFseb5qgCb/ZpYAlKT+4=
github.com/davecgh/go-spew v1.1.0/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/davecgh/go-spew v1.1.1 h1:vj9j/u1bqnvCEfJOwUhtlOARqs3+rkHYY13jYWTU97c=
github.com/davecgh/go-spew v1.1.1/go.mod h1:J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=
github.com/go-gl/glfw v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU=
github.com/goccy/go-json v0.9.4 h1:L8MLKG2mvVXiQu07qB6hmfqeSYQdOnqPot2GhsIwIaI=
github.com/goccy/go-json v0.9.4/go.mod h1:6MelG93GURQebXPDq3khkgXZkazVtN9CRI+MGFi0w8I=
github.com/golang/glog v1.0.0 h1:nfP3RFugxnNRyKgeWd4oI1nYvXpxrx8ck8ZrcizshdQ=
github.com/golang/glog v1.0.0/go.mod h1:EWib/APOK0SL3dFbYqvxE3UYd8E6s1ouQ7iEp/0LWV4=
github.com/k0kubun/go-ansi v0.0.0-20180517002512-3bf9e2903213/go.mod h1:vNUNkEQ1e29fT/6vq2aBdFsgNPmy8qMdSay1npru+Sw=
github.com/klauspost/compress v1.15.9 h1:wKRjX6JRtDdrE9qwa4b/Cip7ACOshUI4smpCQanqjSY=
github.com/klauspost/compress v1.15.9/go.mod h1:PhcZ0MbTNciWF3rruxRgKxI5NkcHHrHUDtV4Yw2GlzU=
@ -44,18 +37,12 @@ github.com/schollz/progressbar/v3 v3.8.6 h1:QruMUdzZ1TbEP++S1m73OqRJk20ON11m6Wqv
github.com/schollz/progressbar/v3 v3.8.6/go.mod h1:W5IEwbJecncFGBvuEh4A7HT1nZZ6WNIL2i3qbnI0WKY=
github.com/sirupsen/logrus v1.8.1 h1:dJKuHgqk1NNQlqoA6BTlM1Wf9DOH3NBjQyu0h9+AZZE=
github.com/sirupsen/logrus v1.8.1/go.mod h1:yWOB1SBYBC5VeMP7gHvWumXLIWorT60ONWic61uBYv0=
github.com/spf13/pflag v1.0.5 h1:iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=
github.com/spf13/pflag v1.0.5/go.mod h1:McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An2Bg=
github.com/stretchr/objx v0.1.0/go.mod h1:HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=
github.com/stretchr/testify v1.2.2/go.mod h1:a8OnRcib4nhh0OaRAV+Yts87kKdq0PP7pXfy6kDkUVs=
github.com/stretchr/testify v1.3.0 h1:TivCn/peBQ7UY8ooIcPgZFpTNSz0Q2U6UrFlUfqbe0Q=
github.com/stretchr/testify v1.3.0/go.mod h1:M5WIy9Dh21IEIfnGCwXGc5bZfKNJtfHm1UVUgZn+9EI=
github.com/tevino/abool/v2 v2.0.1 h1:OF7FC5V5z3yAWyixbc32ecEzrgAJCsPkVOsPM2qoZPI=
github.com/tevino/abool/v2 v2.0.1/go.mod h1:+Lmlqk6bHDWHqN1cbxqhwEAwMPXgc8I1SDEamtseuXY=
github.com/vc60er/deptree v0.0.0-20220713110736-c48b0387dddc h1:4464jBLFbewiRZLs1hHxKnN7f4ZUtrXXatZIb6CLezk=
github.com/vc60er/deptree v0.0.0-20220713110736-c48b0387dddc/go.mod h1:3wapZtrks0NHAFIURL9Lz3ccBtrUUK32nCAokPyHebQ=
github.com/yuin/goldmark v1.4.13 h1:fVcFKWvrslecOb/tg+Cc05dkeYx540o0FuFt3nUVDoE=
github.com/yuin/goldmark v1.4.13/go.mod h1:6yULJ656Px+3vBD8DxQVa3kxgyrAnzto9xy5taEt/CY=
golang.org/x/crypto v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=
golang.org/x/crypto v0.0.0-20190510104115-cbcb75029529/go.mod h1:yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=
golang.org/x/crypto v0.0.0-20220131195533-30dcbda58838 h1:71vQrMauZZhcTVK6KdYM+rklehEEwb3E+ZhaE5jrPrE=
@ -67,13 +54,9 @@ golang.org/x/image v0.0.0-20190227222117-0694c2d4d067/go.mod h1:kZ7UVZpmo3dzQBMx
golang.org/x/image v0.0.0-20190802002840-cff245a6509b/go.mod h1:FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0=
golang.org/x/mobile v0.0.0-20190719004257-d2bd2a29d028/go.mod h1:E/iHnbuqvinMTCcRqshq8CkpyQDoeVncDDYHnLhea+o=
golang.org/x/mod v0.1.0/go.mod h1:0QHyrYULN0/3qlju5TqG8bIK38QM8yzMo5ekMj3DlcY=
golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4 h1:6zppjxzCulZykYSLyVDYbneBfbaBIQPYMevg0bEwv2s=
golang.org/x/mod v0.6.0-dev.0.20220419223038-86c51ed26bb4/go.mod h1:jJ57K6gSWd91VN4djpZkiMVwK6gcyfeH4XE8wZrZaV4=
golang.org/x/net v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=
golang.org/x/net v0.0.0-20190620200207-3b0461eec859/go.mod h1:z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=
golang.org/x/net v0.0.0-20211112202133-69e39bad7dc2/go.mod h1:9nx3DQGgdP8bBQD5qxJ1jj9UTztislL4KSBs9R2vV5Y=
golang.org/x/net v0.0.0-20220722155237-a158d28d115b h1:PxfKdU9lEEDYjdIzOtC4qFWgkU2rGHdKlKowJSMN9h0=
golang.org/x/net v0.0.0-20220722155237-a158d28d115b/go.mod h1:XRhObCWvk6IyKnWLug+ECip1KBveYUHfp+8e9klMJ9c=
golang.org/x/sync v0.0.0-20190423024810-112230192c58/go.mod h1:RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=
golang.org/x/sys v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=
golang.org/x/sys v0.0.0-20190312061237-fead79001313/go.mod h1:h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=
@ -84,8 +67,6 @@ golang.org/x/sys v0.0.0-20210423082822-04245dca01da/go.mod h1:h1NjWce9XRLGQEsW7w
golang.org/x/sys v0.0.0-20210615035016-665e8c7367d1/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20210630005230-0f9fa26af87c/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220128215802-99c3d69c2c27/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220204135822-1c1b9b1eba6a h1:ppl5mZgokTT8uPkmYOyEUmPTr3ypaKkg5eFOGrAmxxE=
golang.org/x/sys v0.0.0-20220204135822-1c1b9b1eba6a/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f h1:v4INt8xihDGvnrfjMDVXGxw9wrfxYyCjk0KbXjhR55s=
golang.org/x/sys v0.0.0-20220722155257-8c9f86f7a55f/go.mod h1:oPkhp1MJrh7nUepCBck5+mAzfO9JrbApNNgaTdGDITg=
golang.org/x/term v0.0.0-20201126162022-7de9c90e9dd1/go.mod h1:bj7SfCRtBDWHUb9snDiAeCFNEtKQo2Wmx5Cou7ajbmo=
@ -95,11 +76,10 @@ golang.org/x/text v0.3.0/go.mod h1:NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=
golang.org/x/text v0.3.6/go.mod h1:5Zoc/QRtKVWzQhOtBMvqHzDpF6irO9z98xDceosuGiQ=
golang.org/x/tools v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=
golang.org/x/tools v0.0.0-20190927191325-030b2cf1153e/go.mod h1:b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=
golang.org/x/tools v0.1.12 h1:VveCTK38A2rkS8ZqFY25HIDFscX5X9OoEhJd3quQmXU=
golang.org/x/tools v0.1.12/go.mod h1:hNGJHUnrk76NpqgfD5Aqm5Crs+Hm0VOH/i9J2+nxYbc=
golang.org/x/xerrors v0.0.0-20190717185122-a985d3407aa7/go.mod h1:I/5z698sn9Ka8TeJc9MKroUUfqBBauWjQqLJ2OPfmY0=
gonum.org/v1/gonum v0.11.0 h1:f1IJhK4Km5tBJmaiJXtk/PkL4cdVX6J+tGiM187uT5E=
gonum.org/v1/gonum v0.11.0/go.mod h1:fSG4YDCxxUZQJ7rKsQrj0gMOg00Il0Z96/qMA4bVQhA=
scientificgo.org/special v0.0.0 h1:P6WJkECo6tgtvZAEfNXl+KEB9ReAatjKAeX8U07mjSc=
scientificgo.org/special v0.0.0/go.mod h1:LoGVh9tS431RLTJo7gFlYDKFWq44cEb7QqL+M0EKtZU=
scientificgo.org/testutil v0.0.0 h1:y356DHRo0tAz9zIFmxlhZoKDlHPHaWW/DCm9k3PhIMA=
scientificgo.org/testutil v0.0.0/go.mod h1:Go6R4b+9YkFocMo3H3vNQ7tjbrX9Rc12wal7NZjvPXg=