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obidemerge: set demerge on sample the default

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This commit is contained in:
Eric Coissac
2025-01-10 17:09:44 +01:00
parent d066bb6878
commit 4ae3336135
3 changed files with 4 additions and 14 deletions
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2
pkg/obioptions/version.go
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@ -8,7 +8,7 @@ import (
// corresponds to the last commit, and not the one when the file will be // corresponds to the last commit, and not the one when the file will be
// commited // commited
var _Commit = "becb995" var _Commit = "d066bb6"
var _Version = "Release 4.2.0" var _Version = "Release 4.2.0"
// Version returns the version of the obitools package. // Version returns the version of the obitools package.

10
pkg/obitools/obidemerge/demerge.go
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@ -33,12 +33,6 @@ func MakeDemergeWorker(key string) obiseq.SeqWorker {
} }
func CLIDemergeSequences(iterator obiiter.IBioSequence) obiiter.IBioSequence { func CLIDemergeSequences(iterator obiiter.IBioSequence) obiiter.IBioSequence {
worker := MakeDemergeWorker(CLIDemergeSlot())
if CLIHasSlotToDemerge() { return iterator.MakeIWorker(worker, false, obioptions.CLIParallelWorkers(), 0)
worker := MakeDemergeWorker(CLIDemergeSlot())
return iterator.MakeIWorker(worker, false, obioptions.CLIParallelWorkers(), 0)
}
return iterator
} }

6
pkg/obitools/obidemerge/options.go
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@ -5,7 +5,7 @@ import (
"github.com/DavidGamba/go-getoptions" "github.com/DavidGamba/go-getoptions"
) )
var _Demerge = "" var _Demerge = "sample"
func DemergeOptionSet(options *getoptions.GetOpt) { func DemergeOptionSet(options *getoptions.GetOpt) {
@ -24,7 +24,3 @@ func OptionSet(options *getoptions.GetOpt) {
func CLIDemergeSlot() string { func CLIDemergeSlot() string {
return _Demerge return _Demerge
} }
func CLIHasSlotToDemerge() bool {
return _Demerge != ""
}