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https://github.com/metabarcoding/obitools4.git
synced 2025-06-29 16:20:46 +00:00
Two small corrections on options
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@ -8,7 +8,7 @@ import (
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// corresponds to the last commit, and not the one when the file will be
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// commited
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var _Commit = "ccd3b06"
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var _Commit = "4fe0db6"
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var _Version = "Release 4.2.0"
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// Version returns the version of the obitools package.
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@ -67,11 +67,6 @@ func TaxonomySelectionOptionSet(options *getoptions.GetOpt) {
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}
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func SequenceSelectionOptionSet(options *getoptions.GetOpt) {
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TaxonomySelectionOptionSet(options)
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options.StringVar(&_SaveRejected, "save-discarded", _SaveRejected,
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options.ArgName("FILENAME"),
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options.Description("Indicates in which file not selected sequences must be saved."))
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options.StringVar(&_IdList, "id-list", _IdList,
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options.ArgName("FILENAME"),
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options.Description("<FILENAME> points to a text file containing the list of sequence record identifiers to be selected."+
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@ -168,6 +163,10 @@ func SequenceSelectionOptionSet(options *getoptions.GetOpt) {
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func OptionSet(options *getoptions.GetOpt) {
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obiconvert.OptionSet(options)
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SequenceSelectionOptionSet(options)
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options.StringVar(&_SaveRejected, "save-discarded", _SaveRejected,
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options.ArgName("FILENAME"),
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options.Description("Indicates in which file not selected sequences must be saved."))
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}
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func CLIMinSequenceLength() int {
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@ -17,8 +17,7 @@ func ScriptOptionSet(options *getoptions.GetOpt) {
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options.StringVar(&_script, "script", _script,
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options.Description("The script to execute."),
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options.Alias("S"),
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options.Description("Name of a map attribute."))
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options.Alias("S"))
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options.BoolVar(&_askTemplate, "template", _askTemplate,
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options.Description("Print on the standard output a script template."),
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