19 Commits

Author SHA1 Message Date
5a3705b6bb Adds the --silent-warning options to the obitools commands and removes the --pared-with option from some of the obitols commands. 2025-03-25 16:44:46 +01:00
6a8061cc4f Add managment of the taxonomy alias politic 2025-02-10 14:05:47 +01:00
b9bee5f426 Changes to be committed:
modified:   go.mod
	modified:   go.sum
	modified:   pkg/obilua/obilib.go
	modified:   pkg/obilua/obiseq.go
	modified:   pkg/obilua/obiseqslice.go
	new file:   pkg/obilua/obitaxon.go
	new file:   pkg/obilua/obitaxonomy.go
	modified:   pkg/obioptions/version.go
2025-02-02 16:52:52 +01:00
7c4042df6b introduce obidefault 2025-01-27 17:12:45 +01:00
ccd3b06532 Merge branch 'master' into taxonomy 2024-12-20 20:06:57 +01:00
f2525d7b07 Changes to be committed:
modified:   pkg/obilua/lua.go
	modified:   pkg/obioptions/version.go
2024-12-04 11:42:05 +01:00
39dd3e3ce8 Add management of []interface{} to the LUA API. 2024-12-04 10:58:17 +01:00
d29a56dcbf Changes to be committed:
modified:   Release-notes.md
	modified:   pkg/obialign/pairedendalign.go
	modified:   pkg/obilua/obiseq.go
	modified:   pkg/obioptions/version.go
	modified:   pkg/obiseq/biosequence.go
	modified:   pkg/obitools/obipairing/pairing.go
2024-11-27 09:56:22 +01:00
03f4e88a17 Fisrt functional version 2024-11-14 19:10:23 +01:00
241f2286f2 remove the slice pool management 2024-09-24 16:31:30 +02:00
65ae82622e correction of several small bugs 2024-09-03 06:08:07 -03:00
1b1cd41fd3 Add some code refactoring from the blackboard branch 2024-08-02 12:35:46 +02:00
55ce36f329 Update of obipcr and homogenization of logging
Former-commit-id: 46abf47c19ace5248042c02cf1f81d9f6c12eb10
2024-05-16 15:18:30 +02:00
9e63013bc2 Correction on obiformat of bug leading to partial parsing and add godocs
Former-commit-id: b27105355f1a330eedf6eaa72c8ac94f06806c28
2024-05-07 10:54:12 +02:00
df74b2b2bd Add a basic managment of obisequenceslice to obiscript
Former-commit-id: c3d2888ebbfb237826630548b839ce93cdbf86eb
2024-04-16 12:58:25 +02:00
cb35612a6c new --version option and qualities method in obiscript
Former-commit-id: 7b0ce2901785d5c7494dec3a7a95d1fc5dc4a52b
2024-04-13 12:40:43 +02:00
6758ee6a8a Patch conversion from lua table to go slice or map
Former-commit-id: d94b879215374438a096e4b80a49b362266149ac
2024-03-12 17:18:29 +01:00
65933ca031 A working version of obiscript
Former-commit-id: 6652ac7dfe681e6c92a2946c34a8248bd62996b0
2024-03-08 21:39:05 +01:00
b40015deb7 first preliminary version of obiscript.
Former-commit-id: 0d2c0fc5e33e0873ba5c04aca4cf7dd69aa83c90
2024-03-06 12:56:44 -03:00