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656eda1f73
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A fiirst version of LCS score function
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2022-03-07 16:37:21 +01:00 |
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62cd1c44dc
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Corrects some bug in building the sequence filter
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2022-02-25 10:36:01 +01:00 |
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011898bd9d
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A first version of obigrep. Normally fully functionnal, but not fully tested
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2022-02-25 07:29:52 +01:00 |
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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f18cc034bb
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add an option alias -O for the old obi format
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2022-02-24 07:26:55 +01:00 |
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eaf65fbcce
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Some code refactoring, a new version of obiuniq more efficient in memory and a first make file allowing to build obitools
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2022-02-24 07:08:40 +01:00 |
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2e7c1834b0
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Big change iin the data model, and a first version of obiuniq
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2022-02-21 19:00:23 +01:00 |
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9737f97084
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before big changes
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2022-02-18 22:53:09 +01:00 |
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37ce3536e1
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New more functionnal version of obiuniq. But it has a memory leak
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2022-02-18 10:01:23 +01:00 |
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6067b92e2f
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Adds the notioon of NA value
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2022-02-18 10:00:42 +01:00 |
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aef546dae3
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Patch a bug in the recycle method
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2022-02-18 10:00:15 +01:00 |
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94457f5116
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Creare a reorder method
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2022-02-18 09:59:47 +01:00 |
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cb125bb2a4
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Adds an error message when no sample can be associated
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2022-02-18 09:58:56 +01:00 |
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2636882f9f
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big bug on subschunk
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2022-02-18 09:58:08 +01:00 |
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ce226acac0
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Few debug on obidistribute and some progresses on obiunique, but -c and -m options are still not working
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2022-02-15 10:49:01 +01:00 |
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3586ecc483
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second version of obidistribute and a first buggy version of obiuniq
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2022-02-15 00:47:02 +01:00 |
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b931321ba1
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Adds the hash option to obidistribute
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2022-02-14 09:12:57 +01:00 |
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eb32620bb3
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Adds a first version of a new obidistribute command
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2022-02-14 00:01:01 +01:00 |
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bd630ea512
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Forget the binary writer
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2022-02-09 22:00:38 +01:00 |
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27556ce81f
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Start of implementing binary file format
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2022-02-07 11:57:08 +01:00 |
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38e4655f38
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Correct for a strange bug...
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2022-02-07 11:51:35 +01:00 |
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30d80db02d
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All an option to limit number of CPU
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2022-02-06 18:52:53 +01:00 |
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98a4363d22
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obimultiplex saves unassigned sequence
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2022-02-01 23:25:19 +01:00 |
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e9cdfd7e03
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Make subseq method dealing with qualities
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2022-02-01 18:49:32 +01:00 |
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bc1d7b26a9
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adds missing file
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2022-02-01 18:04:11 +01:00 |
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8dbda68746
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Adds the command obimultiplex
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2022-02-01 17:31:28 +01:00 |
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76d9309508
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Remame PCR struct to PCRSim
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2022-01-27 12:13:27 +01:00 |
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b9da72d379
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Adds finalizer to ApatSequence
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2022-01-24 22:54:41 +01:00 |
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251d3be923
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Add automatic garbage collection on ApatPattern
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2022-01-24 17:26:30 +01:00 |
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4551df08b1
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Adds a reader for NGS filter files and change some API for the apat library
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2022-01-18 13:09:32 +01:00 |
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6571296bb2
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Add some documentation
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2022-01-16 19:53:39 +01:00 |
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64676db3f4
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Connect the command line options to the algorithm of obipairing
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2022-01-16 17:30:30 +01:00 |
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576a9f4d2d
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A global version of a Slice pool
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2022-01-16 00:21:42 +01:00 |
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e1b7e1761c
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Change the memory management for thee BuildAlignment function
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2022-01-15 19:10:16 +01:00 |
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e8fff6477b
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Work on iterators and recycling of biosequences
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2022-01-14 23:11:36 +01:00 |
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ef66ca4972
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Code refactoring
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2022-01-14 17:32:12 +01:00 |
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5753723618
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Code refactoring
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2022-01-14 17:17:54 +01:00 |
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ff40222902
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Code reefactoring
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2022-01-14 16:10:19 +01:00 |
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45a1765a03
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Code refactoring
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2022-01-14 15:46:36 +01:00 |
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2163db94d0
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Code refactoring
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2022-01-14 15:36:39 +01:00 |
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402d54cb62
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Code refactoring
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2022-01-14 15:30:01 +01:00 |
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e80a1114aa
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removes empty file
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2022-01-14 15:19:11 +01:00 |
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69c61bc190
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Documentation and refactoring
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2022-01-14 15:15:26 +01:00 |
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236c7277e0
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Adds documentation and reformats names
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2022-01-14 14:58:59 +01:00 |
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b9b9c0f179
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Patch module name from oa2 to obitools
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2022-01-13 23:43:01 +01:00 |
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f53bf1b804
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First commit
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2022-01-13 23:27:39 +01:00 |
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