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14a4522a07
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site wed
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2023-02-02 23:47:22 +01:00 |
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99be9dd5fd
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Update .gitlab-ci.yml
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2023-02-02 23:36:13 +01:00 |
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61ba3bd648
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Add new directory
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2023-02-02 23:30:04 +01:00 |
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36e6a3edef
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Add new file
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2023-02-02 23:29:04 +01:00 |
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7756aebab1
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more doc
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2023-02-02 23:11:08 +01:00 |
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2002299b7f
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reorder some edits
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2023-02-02 23:09:16 +01:00 |
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060f7db082
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Adds code for the --length option of obiannotate
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2023-02-02 17:15:06 +01:00 |
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5639a09fb9
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Add the --with-taxon-at-rank option code to obiannotate
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2023-02-02 16:36:32 +01:00 |
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886c5118e3
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install script with options of install directory and command prefix
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2023-02-02 13:37:27 +01:00 |
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a1fbaed6e9
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install script with options of install directory and command prefix
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2023-02-02 13:36:55 +01:00 |
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f0a2744435
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install script with options of install directory and command prefix
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2023-02-02 13:23:16 +01:00 |
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49e4cefd5b
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install script with options of install directory and command prefix
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2023-02-02 13:15:59 +01:00 |
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5dbf8d6203
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remove the g prefix by default
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2023-02-02 13:11:04 +01:00 |
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2cb3542d30
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adds installation instructions
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2023-02-02 12:42:44 +01:00 |
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994da5d710
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adds installation instructions
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2023-02-02 12:41:30 +01:00 |
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822e584f9a
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install script with options of install directory and command prefix
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2023-02-02 12:21:49 +01:00 |
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ab0c93d303
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install script with options of install directory and command prefix
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2023-02-02 12:18:04 +01:00 |
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c0df4357dd
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install script with options of install directory and command prefix
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2023-02-02 12:16:56 +01:00 |
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03b124f400
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Patch a bug in MamberSub for primers longer than 32
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2023-02-01 16:23:14 +01:00 |
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7c44243032
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Change the URL of the obitools repository
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2023-02-01 08:34:25 +01:00 |
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e3d4da2859
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small things...
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2023-02-01 08:14:29 +01:00 |
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3a151fc0a0
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updated gitignire
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2023-01-31 23:14:33 +01:00 |
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871f22b83d
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Latest version of the doc in HTML
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2023-01-31 23:04:28 +01:00 |
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fa6853fca1
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Comment profiling code
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2023-01-31 22:39:34 +01:00 |
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e5835310cc
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Simplify code of the JSON header formater
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2023-01-31 17:16:55 +01:00 |
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57c7187e6d
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Patch the JSON header formater
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2023-01-31 17:15:10 +01:00 |
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9f98075510
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Patched version of install script
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2023-01-27 14:50:45 +01:00 |
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f74c0bd517
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First prelease of obiannotate
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2023-01-27 11:35:39 +01:00 |
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39b47a32bf
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Complement on the doc
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2023-01-27 10:49:28 +01:00 |
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cfddc78161
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Patch an aligment bug on obipairing
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2023-01-25 13:22:56 +01:00 |
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9b7edf0908
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Add an install script to help in installing obitools 4 on Linux or MacOS computers
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2023-01-23 15:44:23 +01:00 |
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2d375df94f
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move the worker class to the obiseq package
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2023-01-22 22:39:13 +01:00 |
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f97f92df72
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rename the iterator class
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2023-01-22 22:04:17 +01:00 |
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4592855095
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Adds the new version of the doc as a quarto book
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2023-01-17 19:06:14 +01:00 |
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f873645e8e
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Remove old bookdown version of the documentation
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2023-01-17 19:02:27 +01:00 |
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20b16c0ba1
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Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
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2022-11-22 15:06:09 +01:00 |
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f4daa7f97f
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Modify the gitignore
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2022-11-17 12:05:11 +01:00 |
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95b28a6612
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Beginning of the documentation
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2022-11-17 11:16:12 +01:00 |
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29563aa94e
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Rename the Length methods Len to follow GO standart
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2022-11-17 11:09:58 +01:00 |
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eb32089305
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Refactoring related to iterators
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2022-11-16 17:13:40 +01:00 |
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09fc426b67
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Refactoring related to iterators
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2022-11-16 17:13:03 +01:00 |
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6f853da9df
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Remove single sequence ierators. Only batch iterators persist
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2022-11-16 10:58:59 +01:00 |
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f674200a6e
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FastLCS with maxError=-1 is equivalent to FullLCS.
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2022-11-16 09:57:36 +01:00 |
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4375dbd9bb
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Switxh alignment to the new LCS method and make a copy of the sequences before annotating them to prevent concurrent map access bug
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2022-11-16 09:27:04 +01:00 |
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18447e66a7
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Patch a critical bug into the CopySlice function.
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2022-11-16 09:24:17 +01:00 |
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7f863fb383
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Prevens errors on FASTA formating an empty sequence
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2022-11-16 09:22:55 +01:00 |
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493c7fddef
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Adds API documentation
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2022-11-16 09:21:54 +01:00 |
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abe210d811
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Correct option alias name to remove dupplicate
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2022-11-15 08:58:41 +01:00 |
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340579f6d7
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New version of LCS computation, with abug on alignment length patched patched
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2022-11-15 08:21:46 +01:00 |
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18be4becec
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Add some new packages
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2022-11-14 14:36:04 +01:00 |
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