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63dc67f344
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add debuging log
Former-commit-id: 7543d12838463bd9d9bcb365e5e6772b51daa5ec
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2023-06-07 17:47:58 +02:00 |
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d5e84ec676
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rename goutils to obiutils
Former-commit-id: 2147f53db972bba571dfdae30c51b62d3e69cec5
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2023-03-24 10:25:12 +07:00 |
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d09011fac2
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Finalyse the obimultiplex with indels
Former-commit-id: cef0ac39dac0e02d16d4bd321966a0f8a67f2c85
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2023-03-21 22:01:02 +07:00 |
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27d6c60e25
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Add the possibility to look for patterns allowing indels.
Former-commit-id: 0599c2b0ad16df086dbdb08e491503870d8904be
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2023-03-20 15:28:24 +07:00 |
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4117cbdd08
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Stabilize the obipairing output. whant run twice on the same dataset results are identical
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2023-02-05 11:06:31 +01:00 |
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39b47a32bf
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Complement on the doc
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2023-01-27 10:49:28 +01:00 |
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cfddc78161
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Patch an aligment bug on obipairing
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2023-01-25 13:22:56 +01:00 |
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20b16c0ba1
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Force sequence reading to produce lowercase sequences.
Adds two columns to the obiclean ratio csv file
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2022-11-22 15:06:09 +01:00 |
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29563aa94e
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Rename the Length methods Len to follow GO standart
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2022-11-17 11:09:58 +01:00 |
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f674200a6e
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FastLCS with maxError=-1 is equivalent to FullLCS.
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2022-11-16 09:57:36 +01:00 |
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340579f6d7
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New version of LCS computation, with abug on alignment length patched patched
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2022-11-15 08:21:46 +01:00 |
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0f99f9a6ba
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First trial of a fastest LCS implementation
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2022-11-14 07:42:15 +01:00 |
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6429f24c57
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Accellerate a bit LCS computation
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2022-10-27 17:30:55 +02:00 |
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8aa323dad5
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Add a first version of obitag the successor of ecotag
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2022-10-26 13:16:56 +02:00 |
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f8df48338d
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Several bug in annotation management
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2022-10-12 23:01:47 +02:00 |
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ebefa28cc0
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Patch memory error related to []byte pool
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2022-09-28 14:28:37 +02:00 |
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5dd835d3e7
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A first functional version of obiclean
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2022-08-20 18:01:07 +02:00 |
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a07d348aea
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small change
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2022-07-31 21:52:04 +02:00 |
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656eda1f73
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A fiirst version of LCS score function
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2022-03-07 16:37:21 +01:00 |
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abcf02e488
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Start to use leveled log
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2022-02-24 12:14:52 +01:00 |
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2e7c1834b0
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Big change iin the data model, and a first version of obiuniq
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2022-02-21 19:00:23 +01:00 |
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64676db3f4
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Connect the command line options to the algorithm of obipairing
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2022-01-16 17:30:30 +01:00 |
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576a9f4d2d
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A global version of a Slice pool
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2022-01-16 00:21:42 +01:00 |
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e1b7e1761c
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Change the memory management for thee BuildAlignment function
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2022-01-15 19:10:16 +01:00 |
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e8fff6477b
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Work on iterators and recycling of biosequences
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2022-01-14 23:11:36 +01:00 |
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ff40222902
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Code reefactoring
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2022-01-14 16:10:19 +01:00 |
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45a1765a03
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Code refactoring
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2022-01-14 15:46:36 +01:00 |
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2163db94d0
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Code refactoring
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2022-01-14 15:36:39 +01:00 |
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402d54cb62
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Code refactoring
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2022-01-14 15:30:01 +01:00 |
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69c61bc190
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Documentation and refactoring
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2022-01-14 15:15:26 +01:00 |
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b9b9c0f179
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Patch module name from oa2 to obitools
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2022-01-13 23:43:01 +01:00 |
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f53bf1b804
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First commit
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2022-01-13 23:27:39 +01:00 |
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