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c2f38e737b
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Update of the packages
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2025-04-10 15:16:36 +02:00 |
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8671285d02
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add the --min-sample-count option to obiclean.
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2025-02-24 08:48:31 +01:00 |
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773e54965d
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Patch a bug on compressed output
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2025-02-05 14:18:24 +01:00 |
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b9bee5f426
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Changes to be committed:
modified: go.mod
modified: go.sum
modified: pkg/obilua/obilib.go
modified: pkg/obilua/obiseq.go
modified: pkg/obilua/obiseqslice.go
new file: pkg/obilua/obitaxon.go
new file: pkg/obilua/obitaxonomy.go
modified: pkg/obioptions/version.go
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2025-02-02 16:52:52 +01:00 |
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795df34d1a
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Changes to be committed:
modified: cmd/obitools/obitag/main.go
modified: cmd/obitools/obitag2/main.go
modified: go.mod
modified: go.sum
modified: pkg/obiformats/ncbitaxdump/read.go
modified: pkg/obioptions/version.go
modified: pkg/obiseq/attributes.go
modified: pkg/obiseq/taxonomy_lca.go
modified: pkg/obiseq/taxonomy_methods.go
modified: pkg/obiseq/taxonomy_predicate.go
modified: pkg/obitax/inner.go
modified: pkg/obitax/lca.go
new file: pkg/obitax/taxid.go
modified: pkg/obitax/taxon.go
modified: pkg/obitax/taxonomy.go
modified: pkg/obitax/taxonslice.go
modified: pkg/obitools/obicleandb/obicleandb.go
modified: pkg/obitools/obigrep/options.go
modified: pkg/obitools/obilandmark/obilandmark.go
modified: pkg/obitools/obilandmark/options.go
modified: pkg/obitools/obirefidx/famlilyindexing.go
modified: pkg/obitools/obirefidx/geomindexing.go
modified: pkg/obitools/obirefidx/obirefidx.go
modified: pkg/obitools/obirefidx/options.go
modified: pkg/obitools/obitag/obigeomtag.go
modified: pkg/obitools/obitag/obitag.go
modified: pkg/obitools/obitag/options.go
modified: pkg/obiutils/strings.go
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2024-12-19 13:36:59 +01:00 |
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3d06978808
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a functional new version of obifind
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2024-11-24 19:33:24 +01:00 |
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9e8a7fd9be
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Patch a bug in fastq reader
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2024-10-20 16:07:43 +02:00 |
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b37fc39ead
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switch to go version 1.23.1
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2024-09-24 15:55:01 +02:00 |
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bdb96dda94
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Adds the obimicrosat command
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2024-08-05 15:31:20 +02:00 |
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c7ed47e110
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first version of obidemerge, obijoin and a new filter for obicleandb but to be finnished
Former-commit-id: 8a1ed26e5548c30db75644c294d478ec4d753f19
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2024-07-10 15:21:42 +02:00 |
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c1f03cb1f6
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Switch to faster json library go-json and sonic
Former-commit-id: ab9b4723f1dcf79fe5c073fff4d86f4f6969edfd
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2024-06-23 00:36:08 +02:00 |
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411124d1b3
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Add automatic rules to manage version number
Former-commit-id: f4fcc1927f4169025c1d8cc88c5f3abcdc76037c
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2024-06-01 17:26:16 +02:00 |
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d249902073
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A lot of changes and debug... A complete first
version of the recipy in the Cookbook about
avaluating primers
Former-commit-id: 6c816f5546b3f472f6930d112abe3da04d2d5a55
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2024-05-26 12:56:29 +02:00 |
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55ce36f329
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Update of obipcr and homogenization of logging
Former-commit-id: 46abf47c19ace5248042c02cf1f81d9f6c12eb10
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2024-05-16 15:18:30 +02:00 |
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e25c3b7365
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Bug in the json parsing
Former-commit-id: e652b04b9fa7e11124eb5930c7bec4613c808758
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2024-03-19 13:50:13 +01:00 |
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b40015deb7
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first preliminary version of obiscript.
Former-commit-id: 0d2c0fc5e33e0873ba5c04aca4cf7dd69aa83c90
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2024-03-06 12:56:44 -03:00 |
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38c49e9f38
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Switch GOPATH to the local directory in Makefile
Former-commit-id: ae00f1136021e6fcd5047aadb4762653cf003d5d
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2024-02-27 07:22:57 +01:00 |
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95caebec8f
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update modules
Former-commit-id: 04651744d21f0db3406a0aa7bb9cdf9729140349
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2024-02-16 18:12:59 +01:00 |
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8d77cc4133
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Change path of the obitools pkg
Former-commit-id: 311cbf8df3b990b393c6f4885d62e74564423b65
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2023-11-29 12:14:37 +01:00 |
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9ee45701b7
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correction of two warnings
Former-commit-id: d2d08b5d6f7511598625536f5a708db347742c20
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2023-11-09 22:37:55 +02:00 |
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a96ecb4837
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Adds some unit test
Former-commit-id: b1a59df1c87187a1538f30c447d42bbe96402419
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2023-11-08 11:13:56 +02:00 |
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dedf125f6e
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Patch a bug in Subsequence and adds few unit tests.
Former-commit-id: caddc9ad6523e4ef02899bfe83cc8681ef674383
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2023-11-08 10:16:34 +02:00 |
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61c30f9b6a
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Patch rev complement and first implementation of --auto in obicsv
Former-commit-id: f3020e81283b1073c4d1c2d2ff0887e3998e6764
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2023-11-07 09:37:07 +02:00 |
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62b57f4ede
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A go implementation of the fasta reader
Former-commit-id: 603592c4761fb0722e9e0501d78de1bd3ba238fa
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2023-09-01 09:30:12 +02:00 |
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45ea4dacf7
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Every small changes to include into Release 4.0.4
Former-commit-id: b2a48c5b5c471f072785e02d4bb0f149a09cdf6f
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2023-08-27 17:22:51 +02:00 |
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be47ec909c
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add the --skip-empty option
Former-commit-id: ec9cb0ecaf90a61bf9289cf4c089b5cc2fcb65a5
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2023-07-17 14:24:02 +02:00 |
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f6628a1ba2
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Update install script
Former-commit-id: 0dc6b22490fe6228e0099bd96fb1c53ee2754f03
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2023-05-23 10:09:42 +02:00 |
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0746c95f4f
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Update the package dependencies
Former-commit-id: e3fecfd65ec03f3a354338f16c52c130ea25c7f9
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2023-03-28 21:30:25 +07:00 |
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98eac2360c
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adds a rule to update packages and push the corresponding updates module files
Former-commit-id: 1ffa805e74571f9d970dcb185f187dd586c1a190
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2023-03-21 22:02:18 +07:00 |
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b3922c3896
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Produce less weird crash on non existing files
Former-commit-id: 74bb27bd53c685be530632994bd2ba24c1f362e1
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2023-03-07 17:34:25 +07:00 |
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d4b185b716
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Adds some new dependencies
Former-commit-id: 2f31ea6f852651e1ffca1d9ce78b17bddd26f2bb
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2023-03-07 11:12:39 +07:00 |
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6c5fc8f65b
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Save change in various files
Former-commit-id: 428f8ee77c584b79cc2ef45eef2902c3e0754c77
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2023-02-23 23:45:41 +01:00 |
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08521c74e2
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Adds Aho-Corasick matching to obiannotate
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2023-02-09 15:59:11 +01:00 |
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18be4becec
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Add some new packages
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2022-11-14 14:36:04 +01:00 |
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aae3398701
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Replace the CopyMap function by the MustFillMap and adds a InterfaceToIntMap function
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2022-10-12 22:56:38 +02:00 |
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91c2ce551d
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Add new modules
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2022-08-23 15:09:03 +02:00 |
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5dd835d3e7
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A first functional version of obiclean
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2022-08-20 18:01:07 +02:00 |
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0a36447e2a
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Adds the log module
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2022-02-24 12:15:36 +01:00 |
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f18cc034bb
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add an option alias -O for the old obi format
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2022-02-24 07:26:55 +01:00 |
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eb32620bb3
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Adds a first version of a new obidistribute command
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2022-02-14 00:01:01 +01:00 |
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1544bafde1
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Updates modules
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2022-02-09 22:03:38 +01:00 |
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79fcd98e43
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updated go.mod
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2022-02-07 11:52:06 +01:00 |
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e1b7e1761c
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Change the memory management for thee BuildAlignment function
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2022-01-15 19:10:16 +01:00 |
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b9b9c0f179
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Patch module name from oa2 to obitools
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2022-01-13 23:43:01 +01:00 |
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